YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372623, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372623, gi|....

Description	E-value	Query Range	Subject Range
gi\|82406892, gi\|... - gi\|82495056\|ref\|ZP_00880634.1\| cobinamide kinase/cobinamide phosphate guanylyltransferase [Shewanell... gi\|78688767, gi\|... - gi\|78688767\|ref\|ZP_00853434.1\| cobinamide kinase/cobinamide phosphate guanylyltransferase [Shewanell...	246.0	[0..1]	[201..1]
gi\|117921714, gi... - gi\|78684700\|ref\|ZP_00849483.1\| cobinamide kinase/cobinamide phosphate guanylyltransferase [Shewanell...	245.0	[0..1]	[201..1]
gi\|188494400, gi... - gi\|75514017\|ref\|ZP_00736347.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	243.0	[0..1]	[199..1]
gi\|168770302, gi... - gi\|189360775\|gb\|EDU79194.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|189365839, gi... - gi\|189365839\|gb\|EDU84255.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|168784076, gi... - gi\|188998699\|gb\|EDU67685.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|187767608, gi... - gi\|187767608\|gb\|EDU31452.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|168801985, gi... - gi\|189375978\|gb\|EDU94394.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|189370297, gi... - gi\|189370297\|gb\|EDU88713.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... EG13238 - cobinamide kinase and cobinamide phosphate guanylyltransferase / Partial cobalamin biosynthesis path... gi\|195939501 - gi\|195939501\|ref\|ZP_03084883.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|170081625, gi... - gi\|170081625\|ref\|YP_001730945.1\| bifunctional cobinamide kinase and cobinamide phosphate guanylyltra... gi\|238860075, gi... - gi\|238901187\|ref\|YP_002926983.1\| bifunctional cobinamide kinase/ cobinamide phosphate guanylyltransf... gi\|242377649, gi... - gi\|251785376\|ref\|YP_002999680.1\| hypothetical protein B21_01891 [Escherichia coli BL21], gi\|24237764... gi\|253978085, gi... - gi\|254288778\|ref\|YP_003054526.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|253973891, gi... - gi\|254161990\|ref\|YP_003045098.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... COBU_ECOLI - Bifunctional adenosylcobalamin biosynthesis protein cobU [Includes: Adenosylcobinamide kinase (EC 2.... gi\|189354736, gi... - gi\|189354736\|gb\|EDU73155.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... gi\|254593095, gi... - gi\|254793695\|ref\|YP_003078532.1\| bifunctional cobinamide kinase and cobinamide phosphate guanylyltra... gi\|168751546, gi... - gi\|188014423\|gb\|EDU52545.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichia co... EG13238 - cobinamide kinase and cobinamide phosphate guanylyltransferase / Partial cobalamin biosynthesis path... gi\|15802474, gi\|... - gi\|15802474\|ref\|NP_288500.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|83587997, gi\|... - gi\|83587997\|ref\|ZP_00926622.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|208816762, gi... - gi\|208816762\|ref\|ZP_03257882.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichi... gi\|208810355, gi... - gi\|208810355\|ref\|ZP_03252231.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichi... gi\|217329574, gi... - gi\|217329574\|ref\|ZP_03445653.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichi... gi\|208741084, gi... - gi\|208820961\|ref\|ZP_03261281.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherichi... gi\|218690051, gi... - gi\|218690051\|ref\|YP_002398263.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|218365620, gi... - gi\|218558851\|ref\|YP_002391764.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|117624181, gi... - gi\|117624181\|ref\|YP_853094.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfe... gi\|218352334, gi... - gi\|218695602\|ref\|YP_002403269.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|1736654, gi\|8... - gi\|89108814\|ref\|AP_002594.1\| bifunctional cobinamide kinase and cobinamide phosphate guanylyltransfe... gi\|15832042, gi\|... - gi\|15832042\|ref\|NP_310815.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... COBU_ECO57 - Bifunctional adenosylcobalamin biosynthesis protein CobU OS=Escherichia coli O157:H7 GN=cobU PE=3 SV...	243.0	[0..1]	[199..1]
gi\|193062943, gi... - gi\|75259128\|ref\|ZP_00730476.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	243.0	[0..1]	[199..1]
gi\|194420282, gi... - gi\|83571281\|ref\|ZP_00922722.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua...	242.0	[0..1]	[199..1]
gi\|92110340 - gi\|92110340\|emb\|CAJ87608.1\| putative cobinamide kinase/cobinamide phosphate guanylyltransferase [Esc...	242.0	[0..1]	[199..1]
gi\|157156453, gi... - gi\|75186793\|ref\|ZP_00700060.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|169754593, gi... - gi\|170019665\|ref\|YP_001724619.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|170521642, gi... - gi\|170683924\|ref\|YP_001743201.1\| cobinamide kinase/cobinamide phosphate guanyltransferase [Escherich... gi\|192955065, gi... - gi\|75214804\|ref\|ZP_00713293.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|82777465, gi\|... - gi\|82777465\|ref\|YP_403814.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|209919468, gi... - gi\|209919468\|ref\|YP_002293552.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|218554568, gi... - gi\|218554568\|ref\|YP_002387481.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|124530707, gi... - gi\|124530707\|ref\|ZP_01701264.1\| Adenosylcobinamide kinase [Escherichia coli B], gi\|124499025\|gb\|EAY4...	241.0	[0..1]	[199..1]
gi\|74312526, gi\|... - gi\|74312526\|ref\|YP_310945.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer...	241.0	[0..1]	[199..1]
gi\|218369427, gi... - gi\|218699441\|ref\|YP_002407070.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltran... gi\|191170025, gi... - gi\|75242807\|ref\|ZP_00726513.1\| COG2087: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate gua... gi\|26248331, gi\|... - gi\|26248331\|ref\|NP_754371.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|227885538, gi... - gi\|227885538\|ref\|ZP_04003343.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltrans... gi\|226900775, gi... - gi\|237704409\|ref\|ZP_04534890.1\| cobalamin biosynthesis protein cobU [Escherichia sp. 3_2_53FAA], gi\|... gi\|91072818, gi\|... - gi\|91211244\|ref\|YP_541230.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfer... gi\|110343753, gi... - gi\|110642161\|ref\|YP_669891.1\| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransfe...	240.0	[0..1]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHLVLGGAR SGKSRYGETL VRQYTALGFD ACYVATAQAL DAEMASRIRL HQDGRAMDDI  60
   61 DWQLVEEPLA LTARLKRLAK PGRVILVDCL TLWLSNQLLA GNPADEPAST DSDFAITVAT 120
  121 SSKHDALAQW RQAKAEFVGA LNALEGAVIL ISNEVGSGIV PMGELSRQFV DEAGWLNQAV 180
  181 AAVADNVTLV VAGLPLVLKS S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1c9kA
Description:	Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
cob(I)yrinic acid a,c-diamide adenosyltransferase activity	0.0388346549390599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: