YRC Public Data Repository - Protein Structure Prediction

Protein:	COBT_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBT_SHEON.

Description	E-value	Query Range	Subject Range
COBT_PHOPR - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Photobacterium profundum G... COBT_PHOPR - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Photobacterium profundum (...	433.0	[0..8]	[347..2]
gi\|90413242, gi\|... - gi\|90413242\|ref\|ZP_01221237.1\| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferas...	432.0	[0..8]	[347..2]
COBT_CLOAB - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Clostridium acetobutylicum... COBT_CLOAB - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Clostridium acetobutylicum...	428.0	[0..1]	[347..1]
gi\|91708441, gi\|... - gi\|91774454\|ref\|YP_544210.1\| nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase [...	424.0	[0..9]	[347..12]
COBT_GEOSL - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Geobacter sulfurreducens (... COBT_GEOSL - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Geobacter sulfurreducens G...	424.0	[0..3]	[348..4]
COBT_LEPIN - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Leptospira interrogans GN=... COBT_LEPIN - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Leptospira interrogans ser...	423.0	[0..13]	[350..3]
COBT_CHLTE - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Chlorobium tepidum GN=cobT... COBT_CHLTE - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Chlorobium tepidum (strain...	423.0	[0..6]	[349..8]
COBT_LEPIC - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Leptospira interrogans ser... COBT_LEPIC - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Leptospira interrogans ser...	422.0	[0..13]	[350..3]
COBT_GEOUR - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Geobacter uraniireducens (...	419.0	[0..3]	[348..4]
COBT_CLOP1 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase OS=Clostridium perfringens (s...	417.0	[0..3]	[348..2]

Back

Predicted Domain #1

Region A:
Residues: [1-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSSLSFQI EPVSKAQDQV IQQKIDLKTK PPGALGMLES LALQIARIQG PQQLQIVKPT  60
   61 MLVFAGDHGI AAEGVSIAPS EVTHQMVQNF AEGGAAINVF CRQLGLTLEV IDCGILTPVE 120
  121 GVEGIIDQRL GAGTGAIHLE PAMSLDCVDK GFAMARELIE RHHQAGCNLV AFGEMGIGNT 180
  181 SSAAAIMAAI MQLEVADCVG RGTGINSETL ARKLTLVELA LLSHQSAMTG PKQVLACLGG 240
  241 FEIVQMTGAM LAAAERKMLV VVDGFIATAA ALVAVTINAN VRDYLIFAHR SEEQGHQRML 300
  301 EHLQAKPLLS LGLRLGEGTG AALALPLIQA AANFYNQMAS FSDAGIEAVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	99.0
Match:	1d0sA
Description:	Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity	6.11307440325985	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.4037591171855	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
transferase activity	1.06150708725398	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.819573960721987	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: