YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372617, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372617, gi|....

Description	E-value	Query Range	Subject Range
gi\|56519729 - gi\|56519729\|emb\|CAH78524.1\| phosphoglycerate mutase, putative [Plasmodium chabaudi chabaudi] gi\|70942433 - gi\|70942433\|ref\|XP_741383.1\| phosphoglycerate mutase [Plasmodium chabaudi chabaudi]	210.0	[0..1]	[242..1]
gi\|56499296 - gi\|56499296\|emb\|CAH95576.1\| phosphoglycerate mutase, putative [Plasmodium berghei] gi\|68073639 - gi\|68073639\|ref\|XP_678734.1\| phosphoglycerate mutase [Plasmodium berghei strain ANKA]	210.0	[0..1]	[242..1]
gi\|23508399, gi\|... - gi\|23508399\|ref\|NP_701068.1\| phosphoglycerate mutase, putative [Plasmodium falciparum 3D7], gi\|23496...	209.0	[0..1]	[242..1]
gi\|58177556, gi\|... - gi\|58177557\|pdb\|1XQ9\|B Chain B, Structure Of Phosphoglycerate Mutase From Plasmodium Falciparum At 2...	209.0	[0..1]	[242..9]
gi\|214001890 - gi\|214001890\|ref\|ZP_03412625.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALPC - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi C (strain RKS4594)... gi\|213427699 - gi\|213427699\|ref\|ZP_03360449.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV... gi\|213582686 - gi\|213582686\|ref\|ZP_03364512.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213649737 - gi\|213649737\|ref\|ZP_03379790.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213854586 - gi\|213854586\|ref\|ZP_03382826.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|199602212, gi... - gi\|200389767\|ref\|ZP_03216378.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3 gi\|204320976, gi... - gi\|204929982\|ref\|ZP_03221003.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213163241 - gi\|213163241\|ref\|ZP_03348951.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|213420657 - gi\|213420657\|ref\|ZP_03353723.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... gi\|16759697 - gi\|16759697\|ref\|NP_455314.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi... GPMA_SALNS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella newport (strain SL254) GN=gp... gi\|194456919, gi... - gi\|194470555\|ref\|ZP_03076539.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALTI - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhi GN=gpmA PE=3 SV=3 GPMA_SALSV - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella schwarzengrund (strain CVM19... gi\|29138161, gi\|... - gi\|29142530\|ref\|NP_805872.1\| phosphoglyceromutase [Salmonella enterica subsp. enterica serovar Typhi... gi\|197264300, gi... - gi\|197264300\|ref\|ZP_03164374.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonell... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmA PE=3 SV... gi\|205334784, gi... - gi\|205334784\|gb\|EDZ21548.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|168236694, gi... - gi\|197290171\|gb\|EDY29528.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... GPMA_SALCH - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella choleraesuis (strain SC-B67)...	203.0	[0..1]	[243..1]
gi\|92399533 - gi\|92399533\|gb\|ABE76508.1\| phosphoglycerate mutase 2 [Toxoplasma gondii]	203.0	[0..2]	[244..17]
GPMA_SALA4 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella agona (strain SL483) GN=gpmA... GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA... GPMA_SALHS - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella heidelberg (strain SL476) GN... GPMA_SALEP - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella enteritidis PT4 (strain P125... GPMA_SALG2 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella gallinarum (strain 287/91 / ... gi\|167994417, gi... - gi\|205327722\|gb\|EDZ14486.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|205324579, gi... - gi\|205324579\|gb\|EDZ12418.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=... gi\|168263737, gi... - gi\|205347720\|gb\|EDZ34351.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... gi\|205340128, gi... - gi\|205340128\|gb\|EDZ26892.1\| 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [Salmonella en... lcl\|NC_016856.1_... - [gene=gpmA] [protein=phosphoglyceromutase] [protein_id=YP_005236490.1] [location=complement(836703..... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium (strain LT2 / SG... GPMA_SALTY - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmA PE=3 SV=... GPMA_SALPB - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA...	202.0	[0..1]	[243..1]
gi\|194416724, gi... - gi\|83568957\|ref\|ZP_00920422.1\| COG0588: Phosphoglycerate mutase 1 [Shigella dysenteriae 1012], gi\|19...	202.0	[0..1]	[243..1]
GPMA_SALPA - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmA PE=3 SV=... GPMA_SALPA - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi A (strain ATCC 915... GPMA_SALPK - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Salmonella paratyphi A (strain AKU_1260...	201.0	[0..1]	[243..1]
gi\|91209783, gi\|... - gi\|91209783\|ref\|YP_539769.1\| phosphoglycerate mutase 1 [Escherichia coli UTI89], gi\|91071357\|gb\|ABE0... gi\|237707289, gi... - gi\|237707289\|ref\|ZP_04537770.1\| phosphoglyceromutase [Escherichia sp. 3_2_53FAA], gi\|226898499\|gb\|EE... gi\|26107120, gi\|... - gi\|26246721\|ref\|NP_752761.1\| phosphoglyceromutase [Escherichia coli CFT073], gi\|26107120\|gb\|AAN79304...	201.0	[0..1]	[243..6]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVRLLLLR HGECEGGAIL RGRVDVPLSA KGWRQMSAAV ALQVCECHGI YSSTSRRCAE  60
   61 FAKVLATKHA SASVSSSFAS ASSNCISSNN FAAPTSSPLE VSLLEDLQEM DFGDWDGRLL 120
  121 DELYQQDGER MAAYWQDPWA VAPPKGETMA DFEARVDRAI AAILEQAFAC LPLGDKPADA 180
  181 AADTAANIWV VTHGGVIRHL MARALGAVKA VGFYSQLTLP VAALVTINVL EDNQGTRYWR 240
  241 LDWPSGHGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.09691
Match:	1xq9A
Description:	Structure of Phosphoglycerate Mutase from Plasmodium falciparum at 2.6 Resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.74758487942433	bayes_pls_golite062009
alpha-ribazole-5'-P phosphatase activity	0.174640929208739	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: