YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346582, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346582, gi|....

Description	E-value	Query Range	Subject Range
gi\|49646728, gi\|... - gi\|50546785\|ref\|XP_500862.1\| YALI0B13970p [Yarrowia lipolytica], gi\|49646728\|emb\|CAG83113.1\| YALI0B1... gi\|49646728 - gi\|49646728\|emb\|CAG83113.1\| YALI0B13970p [Yarrowia lipolytica]	224.0	[0..2]	[386..64]
GPDM_BOVIN - Glycerol-3-phosphate dehydrogenase, mitochondrial OS=Bos taurus GN=GPD2 PE=2 SV=1	221.0	[0..2]	[390..68]
h0014824 - null GPD2 - glycerol-3-phosphate dehydrogenase 2 (mitochondrial) gi\|114581287, gi... - gi\|114581291\|ref\|XP_001143123.1\| PREDICTED: glycerol-3-phosphate dehydrogenase 2 (mitochondrial) iso...	219.0	[0..2]	[390..68]
gi\|62088378 - gi\|62088378\|dbj\|BAD92636.1\| glycerol-3-phosphate dehydrogenase 2 (mitochondrial) variant [Homo sapie...	219.0	[0..2]	[390..69]
gi\|115973203, gi... - gi\|115973203\|ref\|XP_001180607.1\| PREDICTED: similar to MGC83596 protein [Strongylocentrotus purpurat...	216.0	[0..3]	[379..69]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYDIAIIG GGISGVGIAQ YAAAAGYSTL LIEKGEIGGQ TSANSSKLIH GGLRYLESGQ  60
   61 INLVRKSLLE RRNLLDLAPS LVKPVAFYIP VYQDSRRNPL TIRAGLSLYA LLSEFDPLGR 120
  121 FVSIPAVHWH RFKGLKLSGL KAVFQYWDAQ TDDKLLTQAV ARSAQALGAH IYAEAEFLQL 180
  181 NHLKEQIELS FRHRGEVQQI ETKLVINAAG PWVNEVLAHV EPPLAGVEID WVQGAHLLLD 240
  241 LPAPEGILYL ESCFDKRVIF VMPWYGQMLI GTTETVLTSI DTPPQVTESE TQYLLGIYCH 300
  301 YFPLSPSIEE LKTKIVQTYC GVRVLPKQAS SAFERPRDTL MQTSISHPRL LCLYGGKLTT 360
  361 FRSSSAEVLE WIEQKLGKRQ PIADIDTLKL T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2gagB
Description:	No description for 2gagB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits