YRC Public Data Repository - Protein Structure Prediction

Protein:	PGK_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	391 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGK_SHEON.

Description	E-value	Query Range	Subject Range
gi\|197099640 - gi\|197099640\|ref\|NP_001127126.1\| phosphoglycerate kinase 1 [Pongo abelii] PGK1_PONPY - Phosphoglycerate kinase 1 (EC 2.7.2.3) - Pongo pygmaeus (Orangutan)	586.0	[0..2]	[388..5]
PGK1_PANTR - Phosphoglycerate kinase 1 OS=Pan troglodytes GN=PGK1 PE=2 SV=1 PGK1 - phosphoglycerate kinase 1 gi\|146741442 - gi\|146741442\|dbj\|BAF62377.1\| phosphoglycerate kinase 1 [Pan troglodytes verus] gi\|168279045 - gi\|168279045\|dbj\|BAG11402.1\| phosphoglycerate kinase 1 [synthetic construct]	585.0	[0..2]	[388..5]
PGK1_PONAB - Phosphoglycerate kinase 1 OS=Pongo abelii GN=PGK1 PE=2 SV=4 PGK1_MACFA - Phosphoglycerate kinase 1 OS=Macaca fascicularis GN=PGK1 PE=2 SV=3 PGK1_PONPY - Phosphoglycerate kinase 1 - Pongo pygmaeus (Orangutan) gi\|109131308 - gi\|109131308\|ref\|XP_001100787.1\| PREDICTED: similar to phosphoglycerate kinase 1 isoform 4 [Macaca m...	585.0	[0..2]	[388..5]
PGK1_HORSE - Phosphoglycerate kinase 1 OS=Equus caballus GN=PGK1 PE=1 SV=2	583.0	[0..2]	[388..5]
gi\|61354676 - gi\|61354676\|gb\|AAX41039.1\| phosphoglycerate kinase 1 [synthetic construct]	583.0	[0..2]	[388..5]
gi\|47169449, gi\|... - gi\|47169449\|pdb\|1VJD\|A Chain A, Structure Of Pig Muscle Pgk Complexed With Atp, gi\|47169448\|pdb\|1VJC...	582.0	[0..2]	[388..4]
gi\|55250521 - gb\|AAH86210.1\| Unknown (protein for MGC:98689) [Xenopus laevis] PGK1_MOUSE - Phosphoglycerate kinase 1 OS=Mus musculus GN=Pgk1 PE=1 SV=4	582.0	[0..2]	[388..5]

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Predicted Domain #1

Region A:
Residues: [1-391]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIINMSDLD LQGKRVLIRE DLNVPVSNGV VTSDARLRAS LPTIELALAK GAAVMVMSHL  60
   61 GRPTEGEYNS EFSMQPVVDY LAKALSCPVR LATDYLDGVE VAVGEVVVFE NVRFNKGEKK 120
  121 NDEALSKKMA ALCDVYVMDA FGTAHRAEAS TNGVGLYAPI ACAGPLLAQE LDALGKALDN 180
  181 PARPLVAIVG GSKVSTKLTV LESLSGIVDQ LVVGGGIANT FIAAAGHNVG KSLYEADLID 240
  241 EAKRLVANAQ SRGGDIPVPT DVVVAGEFSP TAAATLKAVS DVGDSDMIFD IGPDSAEALA 300
  301 KIIESAGTIV WNGPVGVFEF DQFGEGTKRI AHAIADSKAF SIAGGGDTLA AVDKYGIADK 360
  361 VSYISTGGGA FLEFLEGKEL PAVAMLKKRG A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	151.0
Match:	1zmrA
Description:	No description for 1zmrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits