YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372349, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372349, gi|....

Description	E-value	Query Range	Subject Range
gi\|87289302, gi\|... - gi\|87308220\|ref\|ZP_01090362.1\| ammonium/methylammonium permease [Blastopirellula marina DSM 3645], g...	390.0	[0..9]	[394..7]
gi\|71673746, gi\|... - gi\|71673746\|ref\|ZP_00671494.1\| PAS:Ammonium transporter [Trichodesmium erythraeum IMS101], gi\|716729...	390.0	[0..6]	[393..97]
gi\|116056286 - gi\|116056286\|emb\|CAL56669.1\| ammonium transporter (ISS) [Ostreococcus tauri]	382.0	[0..3]	[407..729]
gi\|66847348, gi\|... - gi\|70989735\|ref\|XP_749717.1\| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi\|66847348\|gb...	375.0	[0..3]	[400..43]
gi\|45599722, gi\|... - gi\|45656487\|ref\|YP_000573.1\| ammonium transporter [Leptospira interrogans serovar Copenhageni str. F...	375.0	[0..5]	[394..66]
gi\|166853454, gi... - gi\|167039214\|ref\|YP_001662199.1\| ammonium transporter [Thermoanaerobacter sp. X514], gi\|166853454\|gb...	370.0	[0..1]	[403..31]
gi\|24216321, gi\|... - gi\|24216321\|ref\|NP_713802.1\| ammonium transporter [Leptospira interrogans serovar Lai str. 56601], g...	369.0	[0..5]	[394..29]
gi\|145411050, gi... - gi\|82499534\|ref\|ZP_00884977.1\| Ammonium transporter [Caldicellulosiruptor saccharolyticus DSM 8903],...	368.0	[0..1]	[402..30]
Y108_SYNY3 - Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=s... gi\|7450340 - pir\|\|S76687 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y108_SYNY3 - Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0108 PE=...	367.0	[0..3]	[408..81]
gi\|17221150 - gi\|17221150\|gb\|AAL11032.1\| high affinity ammonium transporter [Tuber borchii]	367.0	[0..6]	[405..33]

Back

Predicted Domain #1

Region A:
Residues: [1-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSELRFAL DTFYFLISGA LVMWMAAGFA MLEAGLVRSK NTTEILTKNV VLYAIACVMY  60
   61 LLVGYNIMYV DNAEGGWLPS FGTLIGSQAA DANHALESDF FFQVVFVATA MSIVSGAVAE 120
  121 RMKLWAFLVF SVVMTGIIYP VEGYWTWGKG FIASLGFVDF AGSGIVHMTG AAAAIAGVLL 180
  181 LGARKGKYGP NGQVNPIPGS NLPMATLGMF ILWMGWFGFN GGSQLMVSDA ANASAVAKVF 240
  241 VNTNTAAALG AISALIVCKM IWGKADLTMI LNGILAGLVA ITADPLSPSL LMAGVIGLVA 300
  301 GGLVVFSIVG LDRIKIDDPV GAISVHGVAG FLGLMCVPLS NANATITAQL TGAAIIFAWV 360
  361 FSASFAVWFV LKMTMGIRVS EEEEYNGMDA SDCGIDAYPE FVTVKSAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.69897
Match:	2ns1A
Description:	No description for 2ns1A was found.

Predicted functions:

Term	Confidence	Notes
ammonium transmembrane transporter activity	10.0624820335928	bayes_pls_golite062009
organic cation transmembrane transporter activity	9.07420898067257	bayes_pls_golite062009
cation transmembrane transporter activity	7.57181833547312	bayes_pls_golite062009
ion transmembrane transporter activity	7.46308808953548	bayes_pls_golite062009
methylammonium transmembrane transporter activity	7.38326654060024	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.08971867997216	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	7.03159982829686	bayes_pls_golite062009
transporter activity	5.3870893301235	bayes_pls_golite062009
transmembrane transporter activity	5.3046132351753	bayes_pls_golite062009
substrate-specific transporter activity	5.16067985999244	bayes_pls_golite062009
high affinity secondary active ammonium transmembrane transporter activity	3.56825523857899	bayes_pls_golite062009
amine transmembrane transporter activity	2.81164277777293	bayes_pls_golite062009
active transmembrane transporter activity	1.08017669832334	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: