YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372287, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	610 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372287, gi|....

Description	E-value	Query Range	Subject Range
gi\|114046056, gi... - gi\|114046056\|ref\|YP_736606.1\| thiol:disulfide interchange protein precursor [Shewanella sp. MR-7], g...	531.0	[0..1]	[610..1]
gi\|82407132, gi\|... - gi\|82494888\|ref\|ZP_00880467.1\| Protein-disulfide reductase [Shewanella sp. MR-4], gi\|82407132\|gb\|EAP...	522.0	[0..1]	[610..1]
gi\|78684154, gi\|... - gi\|78684154\|ref\|ZP_00848939.1\| Protein-disulfide reductase [Shewanella sp. ANA-3], gi\|78507906\|gb\|EA...	519.0	[0..1]	[610..1]
gi\|77815406, gi\|... - gi\|77815406\|ref\|ZP_00814638.1\| Protein-disulfide reductase [Shewanella putrefaciens CN-32], gi\|77809...	517.0	[0..1]	[610..1]
gi\|120557618, gi... - gi\|82742192\|ref\|ZP_00904893.1\| Protein-disulfide reductase [Shewanella sp. W3-18-1], gi\|82720466\|gb\|...	512.0	[0..1]	[610..1]
gi\|160873785, gi... - gi\|160873785\|ref\|YP_001553101.1\| thiol:disulfide interchange protein precursor [Shewanella baltica O...	511.0	[0..1]	[610..1]
gi\|126175920, gi... - gi\|68541009\|ref\|ZP_00580757.1\| Protein-disulfide reductase [Shewanella baltica OS155], gi\|68521394\|g...	508.0	[0..1]	[610..1]
gi\|114564818, gi... - gi\|69950261\|ref\|ZP_00638160.1\| Protein-disulfide reductase [Shewanella frigidimarina NCIMB 400], gi\|...	486.0	[0..1]	[609..9]
DSBD_VIBVY - Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus (strain YJ016) GN=dsbD PE=3 SV=1	478.0	[0..1]	[608..1]
DSBD_VIBVU - Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus (strain CMCP6) GN=dsbD PE=3 SV=1 DSBD_VIBVU - Thiol:disulfide interchange protein DsbD OS=Vibrio vulnificus GN=dsbD PE=3 SV=1	474.0	[0..1]	[608..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLSLTFT ALLLLAPLAL SGNAFANNFG FLKSEPELMP VDQAFAFDFK QEGNKVTLNW  60
   61 VIADGYYMYR DKLKFSVNGA ELGTIDLPKG KPHNDEYFGE QEVYYTYIDI PVGLKQADDN 120
  121 GTLSVTFMGC AEGKLCYPPT KRDVSLKAVA ANDGQIATT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1jpeA
Description:	Thiol:disulfide interchange protein DsbD, N-terminal domain (DsbD-alpha)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein disulfide isomerase activity	2.18896015535195	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	2.18896015535195	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	2.02338373977612	bayes_pls_golite062009
catalytic activity	0.60409960326459	bayes_pls_golite062009
isomerase activity	0.121577597676249	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [160-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AASDATEPVT AQTNANSATN APITQQDSLS QMLSNDSLLW TLVIFFGLGI GLALTPCVFP  60
   61 MYPILSGIIV GQGQKLSTAK AFTLSMAYVQ GMAITYSILG LVVASAGMKY QAALQHPAVL 120
  121 VVLAILFFVL SLSMFGLYDL KLPSRFQEKM NSISNNQKGG NLIGVFLMGV ISGLVASPCT 180
  181 TAPLSGALVY VAQTGDLLQG FLALYVLSMG MGVPLLIIGT SGGKLLPRAG AWMNIIKTVF 240
  241 GFLLIAVSIV MLGRIWT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [417-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVVSDVLWSL WGISFTGYLM HQNKLSAFNW KQTVRSVLLM LTLLASFSYG FQAVMGHFGF  60
   61 NHSPV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [482-610]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNTATAEAEH GFKHIKSIED LDRELAAATA AGKPVMLDLY ADWCVACKEF EAITFKDAEV  60
   61 LARMNKIVLL QADVTKSDAV DVALLEKYHV LGLPTLLMFN EQGEPREDLR VTGFMGPKEF 120
  121 AAHLDHLVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	2fweA
Description:	No description for 2fweA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: