YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346183, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346183, gi|....

Description	E-value	Query Range	Subject Range
gi\|15834225, gi\|... - gi\|15834225\|ref\|NP_312998.1\| hypothetical protein ECs4971 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|217322777, gi... - gi\|217326556\|ref\|ZP_03442640.1\| F protein [Escherichia coli O157:H7 str. TW14588], gi\|217322777\|gb\|E... gi\|25376689 - pir\|\|C91250 hypothetical protein ECs4971 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|168761521, gi... - gi\|189368070\|gb\|EDU86486.1\| phage Mu protein F like protein [Escherichia coli O157:H7 str. EC4501], ... gi\|15834225, gi\|... - gi\|15834225\|ref\|NP_312998.1\| hypothetical protein ECs4971 [Escherichia coli O157:H7], gi\|13364447\|db...	544.0	[0..6]	[443..1]
gi\|57904721 - gi\|57904721\|gb\|AAW58966.1\| gp30 [Cloning vector MuNXKan] GPF_BPMU - Putative capsid assembly protein F OS=Enterobacteria phage Mu GN=F PE=2 SV=2	518.0	[0..1]	[444..1]
gi\|75208647, gi\|... - gi\|75208647\|ref\|ZP_00708951.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	510.0	[0..1]	[444..1]
gi\|188493012, gi... - gi\|75513092\|ref\|ZP_00735554.1\| COG2369: Uncharacterized protein, homolog of phage Mu protein gp30 [E...	508.0	[0..1]	[444..1]
gi\|113950616, gi... - gi\|160875250\|ref\|YP_001554566.1\| SPP1 family phage head morphogenesis protein [Shewanella baltica OS...	484.0	[0..1]	[445..1]
VPF_HAEIN - Mu-like prophage FluMu F protein OS=Haemophilus influenzae GN=HI_1502 PE=3 SV=1 VPF_HAEIN - Mu-like prophage FluMu F protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / R...	462.0	[0..32]	[443..1]
gi\|11353387 - pir\|\|E81900 hypothetical protein NMA1315 [imported] - Neisseria meningitidis (strain Z2491 serogroup... gi\|121052179, gi... - gi\|7379991\|emb\|CAB84567.1\| hypothetical protein NMA1315 [Neisseria meningitidis Z2491], gi\|218768171...	444.0	[0..6]	[403..1]
gi\|15676977, gi\|... - gi\|7226334\|gb\|AAF41488.1\| conserved hypothetical protein [Neisseria meningitidis MC58], gi\|15676977\|... gi\|11353044 - pir\|\|B81124 conserved hypothetical protein NMB1096 [imported] - Neisseria meningitidis (strain MC58 ...	442.0	[0..6]	[403..1]
gi\|33602605, gi\|... - gi\|33602605\|ref\|NP_890165.1\| hypothetical protein BB3630 [Bordetella bronchiseptica RB50], gi\|335770...	436.0	[0..6]	[443..1]
gi\|33147939, gi\|... - gi\|33151718\|ref\|NP_873071.1\| hypothetical protein HD0515 [Haemophilus ducreyi 35000HP], gi\|33147939\|...	427.0	[0..6]	[407..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKQRVPETV DLSIAINQAP ADAVAYFRAK GFAISDDWQD VWTRAHARAF TVAKATQMDV  60
   61 LTAIRNEVDA ALSQGLTAKQ FQANLKPQLE KLGWWGKKEV DGREVQLGSP YRLNTIYRQN 120
  121 LQTAYMAGRY RRMLSRTKTH PYWQYVAIDD GQTRPAHARL RGKVFRFDDP IWDIIYPPNG 180
  181 WGCRCRVRAL TEAQVKAMGL TVENGEG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.086186
Match:	PF04233.5
Description:	No description for PF04233.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [208-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIHRFDTETV ARGTGEVLTV PHARIDLPDG SSMSPDLGWA YSPGEAAFGT DVAVAKKLGS  60
   61 IQSLDTRAQF IQALNNSPLR QAQFAQWTDE VLATHPGQKR RPGLGVQALG FMTPSIQAAV 120
  121 TARLGAEPTA LLAIGEKQLV HADSPRHIKE GVALTRDEYQ QLPLMLAQPE AVLWDSKNQN 180
  181 LLYVYATEDD GRKVKVIINS AWKMKRQQAM DAVINVYKIN AVDLKHGQYE LLEGKLEG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits