YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346127, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346127, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	262.0	[0..3]	[441..5]
gi\|218540301, gi... - gi\|218848250\|ref\|YP_002455135.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218540301\|gb\|AC... gi\|229164673, gi... - gi\|229164673\|ref\|ZP_04292537.1\| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi\|2... gi\|116585027, gi... - gi\|190015346\|ref\|YP_001967073.1\| sensor histidine kinase [Bacillus cereus], gi\|190015080\|ref\|YP_0019... gi\|44004552, gi\|... - gi\|44004552\|ref\|NP_982221.1\| sensor histidine kinase [Bacillus cereus ATCC 10987], gi\|42741618\|gb\|AA...	257.0	[0..1]	[441..1]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..3]	[442..5]
gi\|67849842, gi\|... - gi\|67916175\|ref\|ZP_00509894.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	249.0	[0..1]	[441..1]
gi\|152974373, gi... - gi\|89203396\|ref\|ZP_01182066.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	247.0	[0..1]	[441..1]
gi\|52144035, gi\|... - gi\|52144035\|ref\|YP_082793.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51977504\|gb\|AAU19054...	246.0	[0..1]	[441..1]
gi\|228913969, gi... - gi\|228913969\|ref\|ZP_04077593.1\| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar... gi\|227003278, gi... - gi\|227815859\|ref\|YP_002815868.1\| sensor histidine kinase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|229268797, gi... - gi\|229604389\|ref\|YP_002865818.1\| sensor histidine kinase [Bacillus anthracis str. A0248], gi\|2292687... gi\|228662599, gi... - gi\|229120939\|ref\|ZP_04250181.1\| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201], gi\|2... gi\|228814667, gi... - gi\|228944998\|ref\|ZP_04107359.1\| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar... gi\|228833254, gi... - gi\|228926430\|ref\|ZP_04089502.1\| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar... gi\|167639386, gi... - gi\|167639386\|ref\|ZP_02397658.1\| sensor histidine kinase [Bacillus anthracis str. A0193], gi\|16751282... gi\|254740354 - gi\|254740354\|ref\|ZP_05198045.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|170669216, gi... - gi\|170686693\|ref\|ZP_02877913.1\| sensor histidine kinase [Bacillus anthracis str. A0465], gi\|17066921... gi\|254733958 - gi\|254733958\|ref\|ZP_05191672.1\| sensor histidine kinase [Bacillus anthracis str. Western North Ameri... gi\|165870335, gi... - gi\|165870335\|ref\|ZP_02214990.1\| sensor histidine kinase [Bacillus anthracis str. A0488], gi\|16471383... gi\|254726202 - gi\|254726202\|ref\|ZP_05187984.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|167634324, gi... - gi\|167634324\|ref\|ZP_02392645.1\| sensor histidine kinase [Bacillus anthracis str. A0442], gi\|16753021... gi\|254682540 - gi\|254682540\|ref\|ZP_05146401.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|254758838 - gi\|254758838\|ref\|ZP_05210865.1\| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi\|254753742 - gi\|254753742\|ref\|ZP_05205777.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|47501726, gi\|... - gi\|47526578\|ref\|YP_017927.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30261402, gi\|... - gi\|30261402\|ref\|NP_843779.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30255256\|gb\|... gi\|21399214 - ref\|NP_655199.1\| HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase [Bacillus anth... gi\|196040758, gi... - gi\|196040758\|ref\|ZP_03108057.1\| sensor histidine kinase [Bacillus cereus NVH0597-99], gi\|196028548\|g... gi\|218537752, gi... - gi\|218902507\|ref\|YP_002450341.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218537752\|gb\|AC... gi\|190568704, gi... - gi\|190568704\|ref\|ZP_03021608.1\| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|196035324, gi... - gi\|196035324\|ref\|ZP_03102729.1\| sensor histidine kinase [Bacillus cereus W], gi\|195992001\|gb\|EDX5596... gi\|49480021, gi\|... - gi\|49480021\|ref\|YP_035527.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ... gi\|170128925, gi... - gi\|170706391\|ref\|ZP_02896852.1\| sensor histidine kinase [Bacillus anthracis str. A0389], gi\|17012892... gi\|49184232, gi\|... - gi\|49184232\|ref\|YP_027484.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49178159\|g... gi\|172082825, gi... - gi\|177651547\|ref\|ZP_02934336.1\| sensor histidine kinase [Bacillus anthracis str. A0174], gi\|17208282...	244.0	[0..1]	[441..1]
gi\|88925237, gi\|... - gi\|88945207\|ref\|ZP_01148426.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	244.0	[0..1]	[441..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISIRTKLSL WLTGLLVLGT VIGLILFESM LRQAFHDSII NRLEEDLEHI MLATHFNNGE  60
   61 IHIDQSQLSS FYRPAYSGRY FQLNLPNEVI RSRSLWDMQL DIEPLAPSQT RVWQAKGPKN 120
  121 NDMQLLSLGL NSSSANVTAT LTVAQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSIGRRVFSE VYGTKLGVNL AMLVAMIAGI FLILRQSFKP VKQIQHALSR LQEGEIKALE  60
   61 LNN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.58
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [210-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPEVQPLAK TYNELLEYTA KQIERSRNNL GNLSHGLKTP LAVMQQQVEA LGLKDPETAM  60
   61 ALQQQLDAIH KMVERKLAAA RITGDMLPAA QLVVPRDLHS LANTLNKVHR SKNISCNFEL 120
  121 DPSIQRLPIH REDGMELLGN LLDNAFKWAD SQVTVKLWKA QNKLYLSIDD DGPGVADDEL 180
  181 DKLTQRGTRL DESVMGHGLG LSIVKEIAEQ YGIELKFTHS RRLSGLCIEL VLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits