YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346127, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	442 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346127, gi|....

Description	E-value	Query Range	Subject Range
gi\|20808918 - gi\|20808918\|ref\|NP_624089.1\| Sensory transduction histidine kinase [Thermoanaerobacter tengcongensis... gi\|20808918, gi\|... - gi\|20808918\|ref\|NP_624089.1\| sensory transduction histidine kinase [Thermoanaerobacter tengcongensis...	262.0	[0..3]	[441..5]
gi\|218540301, gi... - gi\|218848250\|ref\|YP_002455135.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218540301\|gb\|AC... gi\|229164673, gi... - gi\|229164673\|ref\|ZP_04292537.1\| hypothetical protein bcere0009_53880 [Bacillus cereus R309803], gi\|2... gi\|116585027, gi... - gi\|190015346\|ref\|YP_001967073.1\| sensor histidine kinase [Bacillus cereus], gi\|190015080\|ref\|YP_0019... gi\|44004552, gi\|... - gi\|44004552\|ref\|NP_982221.1\| sensor histidine kinase [Bacillus cereus ATCC 10987], gi\|42741618\|gb\|AA...	257.0	[0..1]	[441..1]
gi\|166853488, gi... - gi\|167039248\|ref\|YP_001662233.1\| integral membrane sensor signal transduction histidine kinase [Ther... gi\|241904558, gi... - gi\|241904558\|ref\|ZP_04789245.1\| histidine kinase [Thermoanaerobacter brockii subsp. finnii Ako-1], g... gi\|76588655, gi\|... - gi\|76795887\|ref\|ZP_00778257.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	252.0	[0..3]	[442..5]
gi\|67849842, gi\|... - gi\|67916175\|ref\|ZP_00509894.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	249.0	[0..1]	[441..1]
gi\|152974373, gi... - gi\|89203396\|ref\|ZP_01182066.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	247.0	[0..1]	[441..1]
gi\|52144035, gi\|... - gi\|52144035\|ref\|YP_082793.1\| sensor histidine kinase [Bacillus cereus E33L], gi\|51977504\|gb\|AAU19054...	246.0	[0..1]	[441..1]
gi\|228913969, gi... - gi\|228913969\|ref\|ZP_04077593.1\| hypothetical protein bthur0012_12070 [Bacillus thuringiensis serovar... gi\|227003278, gi... - gi\|227815859\|ref\|YP_002815868.1\| sensor histidine kinase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|229268797, gi... - gi\|229604389\|ref\|YP_002865818.1\| sensor histidine kinase [Bacillus anthracis str. A0248], gi\|2292687... gi\|228662599, gi... - gi\|229120939\|ref\|ZP_04250181.1\| hypothetical protein bcere0016_12480 [Bacillus cereus 95/8201], gi\|2... gi\|228814667, gi... - gi\|228944998\|ref\|ZP_04107359.1\| hypothetical protein bthur0007_11640 [Bacillus thuringiensis serovar... gi\|228833254, gi... - gi\|228926430\|ref\|ZP_04089502.1\| hypothetical protein bthur0010_11490 [Bacillus thuringiensis serovar... gi\|167639386, gi... - gi\|167639386\|ref\|ZP_02397658.1\| sensor histidine kinase [Bacillus anthracis str. A0193], gi\|16751282... gi\|254740354 - gi\|254740354\|ref\|ZP_05198045.1\| sensor histidine kinase [Bacillus anthracis str. Kruger B] gi\|170669216, gi... - gi\|170686693\|ref\|ZP_02877913.1\| sensor histidine kinase [Bacillus anthracis str. A0465], gi\|17066921... gi\|254733958 - gi\|254733958\|ref\|ZP_05191672.1\| sensor histidine kinase [Bacillus anthracis str. Western North Ameri... gi\|165870335, gi... - gi\|165870335\|ref\|ZP_02214990.1\| sensor histidine kinase [Bacillus anthracis str. A0488], gi\|16471383... gi\|254726202 - gi\|254726202\|ref\|ZP_05187984.1\| sensor histidine kinase [Bacillus anthracis str. A1055] gi\|167634324, gi... - gi\|167634324\|ref\|ZP_02392645.1\| sensor histidine kinase [Bacillus anthracis str. A0442], gi\|16753021... gi\|254682540 - gi\|254682540\|ref\|ZP_05146401.1\| sensor histidine kinase [Bacillus anthracis str. CNEVA-9066] gi\|254758838 - gi\|254758838\|ref\|ZP_05210865.1\| sensor histidine kinase [Bacillus anthracis str. Australia 94] gi\|254753742 - gi\|254753742\|ref\|ZP_05205777.1\| sensor histidine kinase [Bacillus anthracis str. Vollum] gi\|47501726, gi\|... - gi\|47526578\|ref\|YP_017927.1\| sensor histidine kinase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30261402, gi\|... - gi\|30261402\|ref\|NP_843779.1\| sensor histidine kinase [Bacillus anthracis str. Ames], gi\|30255256\|gb\|... gi\|21399214 - ref\|NP_655199.1\| HATPase_c, Histidine kinase-, DNA gyrase B-, phytochrome-like ATPase [Bacillus anth... gi\|196040758, gi... - gi\|196040758\|ref\|ZP_03108057.1\| sensor histidine kinase [Bacillus cereus NVH0597-99], gi\|196028548\|g... gi\|218537752, gi... - gi\|218902507\|ref\|YP_002450341.1\| sensor histidine kinase [Bacillus cereus AH820], gi\|218537752\|gb\|AC... gi\|190568704, gi... - gi\|190568704\|ref\|ZP_03021608.1\| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|196035324, gi... - gi\|196035324\|ref\|ZP_03102729.1\| sensor histidine kinase [Bacillus cereus W], gi\|195992001\|gb\|EDX5596... gi\|49480021, gi\|... - gi\|49480021\|ref\|YP_035527.1\| sensor histidine kinase [Bacillus thuringiensis serovar konkukian str. ... gi\|170128925, gi... - gi\|170706391\|ref\|ZP_02896852.1\| sensor histidine kinase [Bacillus anthracis str. A0389], gi\|17012892... gi\|49184232, gi\|... - gi\|49184232\|ref\|YP_027484.1\| sensor histidine kinase [Bacillus anthracis str. Sterne], gi\|49178159\|g... gi\|172082825, gi... - gi\|177651547\|ref\|ZP_02934336.1\| sensor histidine kinase [Bacillus anthracis str. A0174], gi\|17208282...	244.0	[0..1]	[441..1]
gi\|88925237, gi\|... - gi\|88945207\|ref\|ZP_01148426.1\| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidi...	244.0	[0..1]	[441..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISIRTKLSL WLTGLLVLGT VIGLILFESM LRQAFHDSII NRLEEDLEHI MLATHFNNGE  60
   61 IHIDQSQLSS FYRPAYSGRY FQLNLPNEVI RSRSLWDMQL DIEPLAPSQT RVWQAKGPKN 120
  121 NDMQLLSLGL NSSSANVTAT LTVAQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSIGRRVFSE VYGTKLGVNL AMLVAMIAGI FLILRQSFKP VKQIQHALSR LQEGEIKALE  60
   61 LNN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.58
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [210-442]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPEVQPLAK TYNELLEYTA KQIERSRNNL GNLSHGLKTP LAVMQQQVEA LGLKDPETAM  60
   61 ALQQQLDAIH KMVERKLAAA RITGDMLPAA QLVVPRDLHS LANTLNKVHR SKNISCNFEL 120
  121 DPSIQRLPIH REDGMELLGN LLDNAFKWAD SQVTVKLWKA QNKLYLSIDD DGPGVADDEL 180
  181 DKLTQRGTRL DESVMGHGLG LSIVKEIAEQ YGIELKFTHS RRLSGLCIEL VLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits