YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372176, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372176, gi|....

Description	E-value	Query Range	Subject Range
gi\|238727752, gi... - gi\|77978184\|ref\|ZP_00833616.1\| COG1251: NAD(P)H-nitrite reductase [Yersinia intermedia ATCC 29909], ...	86.0	[0..3]	[59..423]
gi\|77975031, gi\|... - gi\|77975031\|ref\|ZP_00830568.1\| COG1251: NAD(P)H-nitrite reductase [Yersinia frederiksenii ATCC 33641...	86.0	[0..3]	[59..423]
gi\|77962697, gi\|... - gi\|77962697\|ref\|ZP_00826514.1\| COG1251: NAD(P)H-nitrite reductase [Yersinia mollaretii ATCC 43969], ...	86.0	[0..3]	[59..423]
gi\|77958280, gi\|... - gi\|77958280\|ref\|ZP_00822316.1\| COG1251: NAD(P)H-nitrite reductase [Yersinia bercovieri ATCC 43970], ...	86.0	[0..3]	[59..423]
gi\|81242794, gi\|... - gi\|82778646\|ref\|YP_404995.1\| nitrite reductase (NAD(P)H) subunit [Shigella dysenteriae Sd197], gi\|81...	85.0	[0..3]	[59..424]
gi\|157162841, gi... - gi\|75197297\|ref\|ZP_00707367.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli HS], gi\|15716284...	85.0	[0..3]	[59..424]
EG10653 - nitrite reductase, large subunit, NAD(P)H-binding / Nitrite reductase [NAD(P)H] subunit NIRB_ECOLI - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) - Escherichia coli EG10653 - nitrite reductase, large subunit, NAD(P)H-binding / Nitrite reductase [NAD(P)H] subunit gi\|253975194, gi... - gi\|254163293\|ref\|YP_003046401.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|254038529, gi... - gi\|254038529\|ref\|ZP_04872585.1\| nitrite reductase large subunit [Escherichia sp. 1_1_43], gi\|2268390... gi\|169890718, gi... - gi\|170082883\|ref\|YP_001732203.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|253979350, gi... - gi\|254290043\|ref\|YP_003055791.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|83585124, gi\|... - gi\|83585124\|ref\|ZP_00923776.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli 101-1], gi\|19443... gi\|238902457, gi... - gi\|238902457\|ref\|YP_002928253.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|89110644, gi\|... - gi\|89110644\|ref\|AP_004424.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli str...	85.0	[0..3]	[59..424]
gi\|81247127, gi\|... - gi\|82545716\|ref\|YP_409663.1\| nitrite reductase (NAD(P)H) subunit [Shigella boydii Sb227], gi\|8124712...	85.0	[0..3]	[59..424]
gi\|25498730 - pir\|\|E86001 nitrite reductase (NAD(P)H) subunit [imported] - Escherichia coli (strain O157:H7, subst... gi\|15803879, gi\|... - gi\|15803879\|ref\|NP_289913.1\| nitrite reductase (NAD(P)H) subunit [Escherichia coli O157:H7 EDL933], ...	85.0	[0..3]	[59..424]
gi\|91074417, gi\|... - gi\|91212843\|ref\|YP_542829.1\| nitrite reductase [NAD(P)H] large subunit [Escherichia coli UTI89], gi\|... gi\|110345197, gi... - gi\|110643605\|ref\|YP_671335.1\| nitrite reductase [NAD(P)H] large subunit [Escherichia coli 536], gi\|1... gi\|110616747, gi... - gi\|110807199\|ref\|YP_690719.1\| nitrite reductase (NAD(P)H) subunit [Shigella flexneri 5 str. 8401], g... gi\|170018398, gi... - gi\|170018398\|ref\|YP_001723352.1\| nitrite reductase (NAD(P)H), large subunit [Escherichia coli ATCC 8... gi\|189380140, gi... - gi\|189380140\|gb\|EDU98556.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|195934863 - gi\|195934863\|ref\|ZP_03080245.1\| nitrite reductase (NAD(P)H), large subunit [Escherichia coli O157:H7... gi\|170520970, gi... - gi\|170683252\|ref\|YP_001745614.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli SMS-3-... gi\|208814304, gi... - gi\|208814304\|ref\|ZP_03255633.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7... gi\|208808624, gi... - gi\|208808624\|ref\|ZP_03250961.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7... gi\|209162299, gi... - gi\|209400899\|ref\|YP_002272808.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H... gi\|208821398, gi... - gi\|208821398\|ref\|ZP_03261718.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7... gi\|188492187, gi... - gi\|75516166\|ref\|ZP_00738284.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli 53638], gi\|18849... gi\|188014190, gi... - gi\|188014190\|gb\|EDU52312.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|74313872, gi\|... - gi\|74313872\|ref\|YP_312291.1\| nitrite reductase (NAD(P)H) subunit [Shigella sonnei Ss046], gi\|7385734... gi\|190908192, gi... - gi\|75241539\|ref\|ZP_00725384.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli F11], gi\|1911715... gi\|168759396, gi... - gi\|189369461\|gb\|EDU87877.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|192932649, gi... - gi\|75260345\|ref\|ZP_00731613.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli E22], gi\|1930618... gi\|189358961, gi... - gi\|189358961\|gb\|EDU77380.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|168772737, gi... - gi\|187771762\|gb\|EDU35606.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|189364692, gi... - gi\|189364692\|gb\|EDU83111.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|56383870, gi\|... - gi\|56480319\|ref\|NP_709140.2\| nitrite reductase (NAD(P)H) subunit [Shigella flexneri 2a str. 301], gi... gi\|168785176, gi... - gi\|189374375\|gb\|EDU92791.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|189002552, gi... - gi\|189002552\|gb\|EDU71538.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7 str... gi\|75180020, gi\|... - gi\|75180020\|ref\|ZP_00700007.1\| COG1251: NAD(P)H-nitrite reductase [Shigella boydii BS512], gi\|187733... gi\|117625640, gi... - gi\|117625640\|ref\|YP_858963.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli AP... gi\|124528140, gi... - gi\|124528140\|ref\|ZP_01699473.1\| nitrite reductase (NAD(P)H), large subunit [Escherichia coli B], gi\|... gi\|191168417, gi... - gi\|75228406\|ref\|ZP_00715052.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli B7A], gi\|1911684... gi\|75236967, gi\|... - gi\|75236967\|ref\|ZP_00721023.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli E110019], gi\|193... gi\|75188140, gi\|... - gi\|75188140\|ref\|ZP_00701407.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli E24377A], gi\|157... gi\|194427019, gi... - gi\|75211732\|ref\|ZP_00711796.1\| COG1251: NAD(P)H-nitrite reductase [Escherichia coli B171], gi\|194427... gi\|215266724, gi... - gi\|215488652\|ref\|YP_002331083.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|209920818, gi... - gi\|209920818\|ref\|YP_002294902.1\| nitrite reductase large subunit [Escherichia coli SE11], gi\|2099140... gi\|26249965, gi\|... - gi\|26249965\|ref\|NP_756005.1\| nitrite reductase [NAD(P)H] large subunit [Escherichia coli CFT073], gi... gi\|218555911, gi... - gi\|218555911\|ref\|YP_002388824.1\| nitrite reductase, large subunit, NAD(P) H-binding [Escherichia col... gi\|30043611, gi\|... - gi\|30065349\|ref\|NP_839520.1\| nitrite reductase (NAD(P)H) subunit [Shigella flexneri 2a str. 2457T], ... gi\|217321964, gi... - gi\|217325743\|ref\|ZP_03441827.1\| nitrite reductase [NAD(P)H], large subunit [Escherichia coli O157:H7... gi\|218353778, gi... - gi\|218697046\|ref\|YP_002404713.1\| nitrite reductase, large subunit, NAD(P) H-binding [Escherichia col... gi\|218429211, gi... - gi\|218691647\|ref\|YP_002399859.1\| nitrite reductase, large subunit, NAD(P) H-binding [Escherichia col... gi\|237703098, gi... - gi\|237703098\|ref\|ZP_04533579.1\| nitrite reductase large subunit [Escherichia sp. 3_2_53FAA], gi\|2269... gi\|254795289, gi... - gi\|254795289\|ref\|YP_003080126.1\| nitrite reductase, large subunit, NAD(P)H-binding [Escherichia coli... gi\|209756768, gi... - gi\|209756776\|gb\|ACI76700.1\| nitrite reductase (NAD(P)H) subunit [Escherichia coli], gi\|209756774\|gb\|...	85.0	[0..3]	[59..424]

Back

Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYVCLCHAIT DTQIKNAVSQ GDTSLADVKK RLGVADQCGK CARMAVQIIQ NQLEIEPKYY  60
   61 EVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.060481
Match:	PF04324.6
Description:	No description for PF04324.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits