YRC Public Data Repository - Protein Structure Prediction

Protein:	AROQ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROQ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|83719706, gi\|... - gi\|83719706\|ref\|YP_441711.1\| 3-dehydroquinate dehydratase [Burkholderia thailandensis E264], gi\|8365...	249.0	[0..4]	[146..60]
gi\|68559799, gi\|... - gi\|94311994\|ref\|YP_585204.1\| 3-dehydroquinate dehydratase [Ralstonia metallidurans CH34], gi\|9335584...	247.0	[0..3]	[146..14]
gi\|76809110, gi\|... - gi\|76809110\|ref\|YP_334870.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 1710b], gi\|7657...	244.0	[0..4]	[146..60]
AROQ2_PSEAE - 3-dehydroquinate dehydratase 2 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ... gi\|107099234 - gi\|107099234\|ref\|ZP_01363152.1\| hypothetical protein PaerPA_01000245 [Pseudomonas aeruginosa PACS2] gi\|218888986, gi... - gi\|218888986\|ref\|YP_002437850.1\| 3-dehydroquinate dehydratase [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548503, gi... - gi\|84318576\|ref\|ZP_00966999.1\| COG0757: 3-dehydroquinate dehydratase II [Pseudomonas aeruginosa C371... AROQ2_PSEAE, ARQ... - (Q9I6P3) 3-dehydroquinate dehydratase 2 (EC 4.2.1.10) (3-dehydroquinase 2) (Type II DHQase 2), 3-deh... gi\|194554329, gi... - gi\|84324622\|ref\|ZP_00972679.1\| COG0757: 3-dehydroquinate dehydratase II [Pseudomonas aeruginosa 2192...	239.0	[0..1]	[146..1]
gi\|48781085, gi\|... - gi\|91785246\|ref\|YP_560452.1\| 3-dehydroquinate dehydratase [Burkholderia xenovorans LB400], gi\|916892...	238.0	[0..4]	[146..3]
gi\|116053958, gi... - gi\|32043413\|ref\|ZP_00140675.1\| COG0757: 3-dehydroquinate dehydratase II [Pseudomonas aeruginosa UCBP...	237.0	[0..1]	[146..1]
gi\|124291611, gi... - gi\|124383591\|ref\|YP_001027264.1\| 3-dehydroquinate dehydratase [Burkholderia mallei NCTC 10229], gi\|1... gi\|126448096, gi... - gi\|126448096\|ref\|YP_001082800.1\| 3-dehydroquinate dehydratase [Burkholderia mallei NCTC 10247], gi\|1... gi\|126220125, gi... - gi\|126440632\|ref\|YP_001060475.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 668], gi\|12... gi\|126227924, gi... - gi\|126454282\|ref\|YP_001067739.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 1106a], gi\|... gi\|52211004, gi\|... - gi\|53720590\|ref\|YP_109576.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei K96243], gi\|522... gi\|53726120, gi\|... - gi\|53726120\|ref\|YP_104046.1\| 3-dehydroquinate dehydratase [Burkholderia mallei ATCC 23344], gi\|52429... gi\|254178993, gi... - gi\|254178993\|ref\|ZP_04885647.1\| 3-dehydroquinate dehydratase, type II [Burkholderia mallei ATCC 1039... gi\|147752001, gi... - gi\|254208107\|ref\|ZP_04914457.1\| 3-dehydroquinate dehydratase, type II [Burkholderia mallei JHU], gi\|... gi\|167912592 - gi\|167912592\|ref\|ZP_02499683.1\| 3-dehydroquinate dehydratase [Burkholderia pseudomallei 112] gi\|147747012, gi... - gi\|254202765\|ref\|ZP_04909128.1\| 3-dehydroquinate dehydratase, type II [Burkholderia mallei FMH], gi\|... gi\|194520513, gi... - gi\|254199107\|ref\|ZP_04905522.1\| 3-dehydroquinate dehydratase, type II [Burkholderia pseudomallei S13... gi\|194508147, gi... - gi\|254190968\|ref\|ZP_04897474.1\| 3-dehydroquinate dehydratase, type II [Burkholderia pseudomallei Pas... gi\|238561258, gi... - gi\|238561258\|ref\|ZP_00442329.2\| 3-dehydroquinate dehydratase, type II [Burkholderia mallei GB8 horse...	237.0	[0..4]	[146..3]
gi\|46143753 - gi\|46143753\|ref\|ZP_00204566.1\| COG0757: 3-dehydroquinate dehydratase II [Actinobacillus pleuropneumo... AROQ_ACTP2 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=aroQ PE=... AROQ_ACTPJ - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=aroQ PE=... AROQ_ACTP7 - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=aroQ PE=... AROQ_ACTPL - 3-dehydroquinate dehydratase OS=Actinobacillus pleuropneumoniae GN=aroQ PE=1 SV=1	236.0	[0..3]	[144..2]
gi\|68348474, gi\|... - gi\|70734175\|ref\|YP_257815.1\| 3-dehydroquinate dehydratase [Pseudomonas fluorescens Pf-5], gi\|6834847...	236.0	[0..3]	[146..50]
gi\|49076012 - gi\|49076012\|gb\|AAT49517.1\| PA0245 [synthetic construct]	235.0	[0..1]	[146..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHKVLLING PNLNLLGRRE PSVYGHQTLA DIVAQLNEQA QAAGVQLEHI QSNAEFELIN  60
   61 AIHATDAQMI IINPAAFTHT SVALRDALLG VDIPFYEVHL SNVHAREPFR HHSYLSDKAI 120
  121 GVICGFGAQG YEFALTAAIK RLKSAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1uqrA
Description:	Type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-dehydroquinate dehydratase activity	4.89182009956779	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
lyase activity	1.8611664916998	bayes_pls_golite062009
carbon-oxygen lyase activity	1.85854553303143	bayes_pls_golite062009
hydro-lyase activity	1.7760166106171	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: