YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345910, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345910, gi|....

Description	E-value	Query Range	Subject Range
gi\|78687389, gi\|... - gi\|78687389\|ref\|ZP_00852139.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. ANA-3], g...	146.0	[0..1]	[163..1]
gi\|82496832, gi\|... - gi\|82496832\|ref\|ZP_00882395.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. MR-4], gi...	146.0	[0..1]	[163..1]
gi\|78688511, gi\|... - gi\|78688511\|ref\|ZP_00853179.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. MR-7], gi...	145.0	[0..1]	[163..1]
gi\|82718945, gi\|... - gi\|82743708\|ref\|ZP_00906338.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. W3-18-1],...	143.0	[0..1]	[163..1]
gi\|120597374, gi... - gi\|82744130\|ref\|ZP_00906724.1\| Zn(II)-responsive transcriptional regulator [Shewanella sp. W3-18-1],... gi\|146294486, gi... - gi\|77813904\|ref\|ZP_00813175.1\| regulatory protein, MerR [Shewanella putrefaciens CN-32], gi\|77811149...	142.0	[0..1]	[163..1]
gi\|78361801, gi\|... - gi\|78366213\|ref\|ZP_00836495.1\| regulatory protein, MerR [Shewanella sp. PV-4], gi\|78361801\|gb\|EAP036...	140.0	[0..1]	[143..1]
gi\|68546216, gi\|... - gi\|68546216\|ref\|ZP_00585764.1\| regulatory protein, MerR [Shewanella amazonensis SB2B], gi\|68516044\|g...	136.0	[0..1]	[144..1]
gi\|68519683, gi\|... - gi\|68542599\|ref\|ZP_00582326.1\| regulatory protein, MerR [Shewanella baltica OS155], gi\|68519683\|gb\|E...	135.0	[0..1]	[155..1]
gi\|90310137, gi\|... - gi\|90408757\|ref\|ZP_01216903.1\| transcriptional regulator, MerR family protein [Psychromonas sp. CNPT...	135.0	[0..1]	[151..1]
gi\|86166095, gi\|... - gi\|87118461\|ref\|ZP_01074360.1\| transcriptional regulator, MerR family protein [Marinomonas sp. MED12...	135.0	[0..1]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRIGELADL CEVKADTLRF YEKHGLLAPS SRTDSGYRVY TDADAARLRF ILRAKAVGFT  60
   61 LSEISELLSI DLDKSNWACA DVKGMVDLKL AQVQAKIAEL LHFQTSLQSL SNACCGGPRS 120
  121 AEHCSILEAL ESSTERVRFE HDHGPGSHSE HAHIAATADK SGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	3.93045200338189	bayes_pls_golite062009
DNA binding	2.76021735963177	bayes_pls_golite062009
nucleic acid binding	2.74030354422037	bayes_pls_golite062009
transcription factor activity	2.40971210693942	bayes_pls_golite062009
binding	2.02368770517087	bayes_pls_golite062009
transcription activator activity	0.653537232350623	bayes_pls_golite062009
protein binding	0.539362924655427	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: