YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372011, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	423 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372011, gi|....

Description	E-value	Query Range	Subject Range
gi\|94805, gi\|151066 - pir\|\|B35384 pilC protein - Pseudomonas aeruginosa, gi\|151066\|gb\|AAA25733.1\| pilin biogenesis protei...	444.0	[0..16]	[422..1]
gi\|11360962 - pir\|\|F82546 fimbrial assembly protein XF2538 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9107745, gi\|1... - gi\|9107745\|gb\|AAF85335.1\|AE004060_10 fimbrial assembly protein [Xylella fastidiosa 9a5c], ref\|NP_299...	429.0	[0..2]	[422..74]
gi\|71163983, gi\|... - gi\|71275174\|ref\|ZP_00651461.1\| type II secretion system protein [Xylella fastidiosa Dixon], gi\|71163... gi\|167965958, gi... - gi\|170731165\|ref\|YP_001776598.1\| fimbrial assembly protein [Xylella fastidiosa M12], gi\|167965958\|gb...	428.0	[0..2]	[422..47]
gi\|71898255, gi\|... - gi\|71898255\|ref\|ZP_00680429.1\| type II secretion system protein [Xylella fastidiosa Ann-1], gi\|71731...	428.0	[0..2]	[422..47]
gi\|126176110, gi... - gi\|68543122\|ref\|ZP_00582837.1\| type II secretion system protein [Shewanella baltica OS155], gi\|68519...	428.0	[0..1]	[422..1]
gi\|68213835, gi\|... - gi\|91776494\|ref\|YP_546250.1\| type II secretion system protein [Methylobacillus flagellatus KT], gi\|9...	426.0	[0..16]	[421..1]
gi\|71734826, gi\|... - gi\|71734826\|ref\|YP_273101.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. phaseol...	426.0	[0..16]	[421..1]
gi\|77461042, gi\|... - gi\|77461042\|ref\|YP_350549.1\| type II secretion system protein [Pseudomonas fluorescens Pf0-1], gi\|77...	426.0	[0..16]	[421..1]
gi\|254244661, gi... - gi\|84322939\|ref\|ZP_00971016.1\| COG1459: Type II secretory pathway, component PulF [Pseudomonas aerug...	425.0	[0..16]	[421..1]
gi\|28868145, gi\|... - gi\|28868145\|ref\|NP_790764.1\| type IV pilus biogenesis protein PilC [Pseudomonas syringae pv. tomato ... tr\|Q888U1\|Q888U1... - Type IV pilus biogenesis protein PilC OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilC PE=...	424.0	[0..16]	[421..1]

Back

Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATTVKKP RPKKIEQKSQ PKIYTFEWKG VNRDGQKTSG ELRGASAAEI RSQLKSQGVN  60
   61 PKTVRKQSAA LFKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDPKITPMDI AMVTRQIATM LAAGVPLVTT IELLGRGHEK VKMRELLATI LSEIQSGIPL  60
   61 SDALRPHRRY FDDLYVDLVA AGEHSGSLDV VFDRIATYRE KSEALKSKIK KAMFYPAAVV 120
  121 IVAILVTALL LLFVVPQFED IFKGFGAE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.136677
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-423]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPAFTQLVLQ ISRGLQSSWY IFLGAIVAGV FLFVRAHRNS QIVRDRVDEA VLKIPAIGPI  60
   61 LHKGAMARFA RTLATTFAAG VPLIDGLESA AGASGNAVYR KAILKIRQEV MAGMQMNVAM 120
  121 RTTGLFPDML IQMVMIGEES GSLDNMLNKV STIYEMQVDD AVDGLSSLIE PIMMVVIGTV 180
  181 VGGLIVAMYL PIFQMGKVVG G

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	18.853872
Match:	PF00482.14
Description:	No description for PF00482.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits