YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345855, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345855, gi|....

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	293.0	[0..1]	[332..12]
gi\|75812768, gi\|... - gi\|75812768\|ref\|YP_320385.1\| zinc-containing alcohol dehydrogenase superfamily protein [Anabaena var...	283.0	[0..1]	[333..321]
gi\|74490347, gi\|... - gi\|75762167\|ref\|ZP_00742065.1\| Quinone oxidoreductase [Bacillus thuringiensis serovar israelensis AT... gi\|228900747, gi... - gi\|228900747\|ref\|ZP_04064963.1\| Oxidoreductase, zinc-binding dehydrogenase [Bacillus thuringiensis I... gi\|218897119, gi... - gi\|218897119\|ref\|YP_002445530.1\| oxidoreductase, zinc-binding dehydrogenase family [Bacillus cereus ...	280.0	[0..1]	[336..1]
gi\|49333085, gi\|... - gi\|49481529\|ref\|YP_036273.1\| quinone oxidoreductase [Bacillus thuringiensis serovar konkukian str. 9... gi\|228933456, gi... - gi\|228933456\|ref\|ZP_04096309.1\| Oxidoreductase, zinc-binding dehydrogenase [Bacillus thuringiensis s...	280.0	[0..1]	[336..1]
gi\|42781260, gi\|... - gi\|42781260\|ref\|NP_978507.1\| quinone oxidoreductase [Bacillus cereus ATCC 10987], gi\|42737182\|gb\|AAS...	279.0	[0..1]	[336..1]
gi\|45547267, gi\|... - ref\|ZP_00187321.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases [Rubrob...	279.0	[0..1]	[334..1]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	278.0	[0..1]	[332..1]
gi\|228655897, gi... - gi\|229127551\|ref\|ZP_04256542.1\| Oxidoreductase, zinc-binding dehydrogenase [Bacillus cereus BDRD-Cer... gi\|229043891, gi... - gi\|229043891\|ref\|ZP_04191587.1\| Oxidoreductase, zinc-binding dehydrogenase [Bacillus cereus AH676], ... gi\|30020244, gi\|... - gi\|30020244\|ref\|NP_831875.1\| quinone oxidoreductase [Bacillus cereus ATCC 14579], gi\|29895794\|gb\|AAP...	278.0	[0..1]	[336..1]
gi\|106770456, gi... - gi\|148655624\|ref\|YP_001275829.1\| alcohol dehydrogenase [Roseiflexus sp. RS-1], gi\|148567734\|gb\|ABQ89...	278.0	[0..1]	[332..1]
gi\|52143317, gi\|... - gi\|52143317\|ref\|YP_083512.1\| quinone oxidoreductase [Bacillus cereus E33L], gi\|51976786\|gb\|AAU18336....	278.0	[0..1]	[336..1]

Back

Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAVGYQTAG AINALENITL AKPTPTGFDL LVEVKAISVN PVDTKIRASS SAPAGEYKIL  60
   61 GWDAVGVVKA IGDKVSLFKV GDEVWYAGDI SRSGSYAEYQ LVDERIVAHK PQTLSYAQAA 120
  121 ALPLTSITAW ELLFDRLGLP QDGSATDARI LIIGAAGGVG SIITQLAVKL TGAEVIGTAS 180
  181 RPESATWVQT LGADVVINHN QPLSQELAKL DIADVTHVIS LTQTDKHFDE IVKVLRPQGK 240
  241 LALIDDPVGP LDVMKLKRKS LSLHWELMFT RSLYQTEDMI AQHHLLNRIA ELIDTGKVKS 300
  301 TFGEHYGTIN AQNLLKAHAQ IESGKAIGKI VLEGFSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.0
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	2.15067835769532	bayes_pls_golite062009
binding	1.82317331968645	bayes_pls_golite062009
chaperone binding	1.14101116877859	bayes_pls_golite062009
oxidoreductase activity	0.984900065905507	bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity	0.861534636764975	bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent	0.558610278939188	bayes_pls_golite062009
catalytic activity	0.217171374336363	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.207183346839821	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.19043692431495	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: