YRC Public Data Repository - Protein Structure Prediction

Protein:	PRPF_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRPF_SHEON.

Description	E-value	Query Range	Subject Range
gi\|78511275, gi\|... - gi\|78689340\|ref\|ZP_00854003.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78511275\|gb\|...	640.0	[0..1]	[396..1]
gi\|77813481, gi\|... - gi\|77813481\|ref\|ZP_00812756.1\| Protein of unknown function DUF453 [Shewanella putrefaciens CN-32], g...	637.0	[0..1]	[395..1]
gi\|117614592, gi... - gi\|78685895\|ref\|ZP_00850669.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78506393\|gb...	636.0	[0..1]	[396..1]
gi\|113886644, gi... - gi\|82495690\|ref\|ZP_00881264.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82406282\|gb\|...	635.0	[0..1]	[396..1]
gi\|120560665, gi... - gi\|82743816\|ref\|ZP_00906438.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82718824\|...	634.0	[0..1]	[395..1]
gi\|72118913, gi\|... - gi\|73541500\|ref\|YP_296020.1\| methylitaconate delta2-delta3-isomerase [Ralstonia eutropha JMP134], gi...	627.0	[0..8]	[395..5]
gi\|91777829, gi\|... - gi\|91777829\|ref\|YP_553037.1\| methylitaconate delta2-delta3-isomerase [Burkholderia xenovorans LB400]...	626.0	[0..8]	[396..5]
gi\|26989061, gi\|... - gi\|26989061\|ref\|NP_744486.1\| hypothetical protein PP_2337 [Pseudomonas putida KT2440], gi\|24983888\|g...	626.0	[0..5]	[395..2]
gi\|46322814, gi\|... - gi\|67542215\|ref\|ZP_00420152.1\| Protein of unknown function DUF453 [Burkholderia vietnamiensis G4], g...	625.0	[0..8]	[395..5]
gi\|67094506, gi\|... - gi\|67657770\|ref\|ZP_00455146.1\| Protein of unknown function DUF453 [Burkholderia cenocepacia AU 1054]... gi\|116651607, gi... - gi\|67665204\|ref\|ZP_00462470.1\| Protein of unknown function DUF453 [Burkholderia cenocepacia HI2424],...	624.0	[0..8]	[395..5]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLFPPQI KVAATYMRGG TSKGVFFRLQ DLPEAAQVPG PARDALLLRV IGSPDPYAKQ  60
   61 IDGMGGATSS TSKTVILSHS SKANHDVDYL FGQVSIDKPF VDWSGNCGNL TAAVGAFAIS 120
  121 NGLIDAARIP RNGVCTVRIW QANIGKTIIA HVPITDGAVQ ETGDFELDGV TFPAAEVQIE 180
  181 FMNPAADDDG EGGCMFPTGN LVDVLEVPGI GRFNATMINA GIPTIFINAE DLGYTGTELQ 240
  241 DDINSDNAAL AKFETIRAHG ALRMGLIKHI DEAASRQHTP KIAFVAPPKS YASSSGKTVA 300
  301 AEDVDLLVRA LSMGKLHHAM MGTAAVAIGT AAAIPGTLVN LAAGGGEKEA VRFGHPSGTL 360
  361 RVGAQAVQEN GEWTVIKAIM SRSARVLMEG FVRVPKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2pvzA
Description:	No description for 2pvzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits