YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345706, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	684 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345706, gi|....

Description	E-value	Query Range	Subject Range
gi\|66043674, gi\|... - gi\|66043674\|ref\|YP_233515.1\| type II and III secretion system protein:NolW-like:NolW-like [Pseudomon...	455.0	[0..1]	[683..8]
gi\|28872241, gi\|... - gi\|28872241\|ref\|NP_794860.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. tomato ... gi\|213925817, gi... - gi\|213969446\|ref\|ZP_03397583.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. toma... tr\|Q87V13\|Q87V13... - Type IV pilus biogenesis protein PilQ OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pilQ PE=...	453.0	[0..1]	[683..8]
gi\|115588409, gi... - gi\|53726586\|ref\|ZP_00141516.2\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	450.0	[0..20]	[683..5]
PILQ_PSEAE - Fimbrial assembly protein PilQ OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / ... PILQ_PSEAE - Fimbrial assembly protein pilQ OS=Pseudomonas aeruginosa GN=pilQ PE=3 SV=2	450.0	[0..20]	[683..5]
gi\|113886710, gi... - gi\|82497271\|ref\|ZP_00882828.1\| type IV pilus biogenesis protein PilQ [Shewanella sp. MR-4], gi\|82404...	450.0	[0..1]	[684..1]
gi\|84317713, gi\|... - gi\|84317713\|ref\|ZP_00966151.1\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	449.0	[0..20]	[683..5]
gi\|107104140 - gi\|107104140\|ref\|ZP_01368058.1\| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]	449.0	[0..20]	[683..5]
gi\|194555063, gi... - gi\|84323873\|ref\|ZP_00971940.1\| COG4796: Type II secretory pathway, component HofQ [Pseudomonas aerug...	448.0	[0..20]	[683..5]
gi\|71733370, gi\|... - gi\|71733370\|ref\|YP_272697.1\| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv. phaseol...	448.0	[0..16]	[683..1]
gi\|78692404, gi\|... - gi\|78692404\|ref\|ZP_00856935.1\| type IV pilus biogenesis protein PilQ [Shewanella sp. MR-7], gi\|78508...	448.0	[0..1]	[684..1]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSAAIKIP LSFLTSGLVK SVIGIALLFG FLPSSFAENR LIDVKYHALV DHQLAVELVF  60
   61 EDAISAPKID SNASPAELVL TFDNSISGLS KDRLPINQVG VKDIVTSQHD ARLKVTLGLS 120
  121 KVKPYQGSVV GNSYRLTIND GVASSQASNN PFVNSVKNID FRRNSNGGGD LLVYLNNRSV 180
  181 AANVEQIGAK LEVQLYNTDI NNDLLYVMDV QDFSTPVKNF ETFKDDLTAR ILVDVTGNY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [240-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFNFKQEDNL FILSINKVER VVATKDIKKY NGKTLSLNFQ NISVRTVLQI IADYNNFNLV  60
   61 TSD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [303-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVEGDITLRL DDVPWDQALD LILQTKGLDK RIEGNILMVA PSEELAIRES QNLKNKQEVK  60
   61 ELAPLYSEYL QINYAKATDI AELLKGADSS LLSPRGSVAV DERTNTVLVK DTAEIIENIH 120
  121 RLVEVLDIPI RQVLIESRMV TVKDDVSEDL GIRWGVTDQQ GNKGTSGSLE G

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.013228
Match:	PF03958.5
Description:	No description for PF03958.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [474-565]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGDIANGKVP SLDNRLNVNL PAAVTNPTSI AFHVAKLADG TILDLELSAL EQENKGEIIA  60
   61 SPRITTSNQK AAYIEQGVEI PYVQSTSSGA TS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [566-684]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTFKKAVLSL RVTPQITPDN RVILDLEITQ DSQGKTVDTP TGPAVAIDTQ RIGTQVLVDN  60
   61 GETIVLGGIY QQNLISRVSK VPILGDIPLV GFLFRNTTDK NERQELLIFV TPKIVNEKL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits