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View Structure Prediction Details

Protein: ASSY_SHEON
Organism: Shewanella oneidensis MR-1
Length: 407 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASSY_SHEON.

Description E-value Query
Range		 Subject
Range
ASSY_ANAVT - Argininosuccinate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=argG PE=3 SV=1
 490.0 [0..11] [407..5]
ASSY_NOSS1 - Argininosuccinate synthase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=argG PE=3 SV=1
gi|25293783 - pir||AF2405 argininosuccinate synthase [imported] - Nostoc sp. (strain PCC 7120)
 489.0 [0..11] [407..5]
ASSY_CARHZ - Argininosuccinate synthase OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...
 486.0 [0..9] [407..1]
ASSY_THEEB - Argininosuccinate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=argG PE=3 SV=1
ASSY_SYNEL - Argininosuccinate synthase OS=Synechococcus elongatus GN=argG PE=3 SV=1
 486.0 [0..11] [407..5]
ASSY_BACHD - Argininosuccinate synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM...
ASSY_BACHD - Argininosuccinate synthase OS=Bacillus halodurans GN=argG PE=3 SV=1
 484.0 [0..8] [406..1]
gi|46117869, gi|... - gi|67925789|ref|ZP_00519089.1| Argininosuccinate synthase [Crocosphaera watsonii WH 8501], gi|678523...
 484.0 [0..11] [407..5]
ASSY_ARATH - Argininosuccinate synthase, chloroplastic OS=Arabidopsis thaliana GN=At4g24830 PE=1 SV=3
 484.0 [0..11] [407..97]
ASSY_NOSP7 - Argininosuccinate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=argG PE=3 SV=1
 483.0 [0..11] [405..5]
ASSY_SYNP6 - Argininosuccinate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=argG...
ASSY_SYNE7 - Argininosuccinate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=argG PE=3 SV=1
 480.0 [0..11] [407..5]
ASSY_OCEIH - Argininosuccinate synthase OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / H...
ASSY_OCEIH - Argininosuccinate synthase OS=Oceanobacillus iheyensis GN=argG PE=3 SV=1
 480.0 [0..8] [406..1]

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Predicted Domain #1
Region A:
Residues: [1-407] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIENKNTGV KKVVLAYSGG LDTSAIIPWL KENYDNCEII AFCADVGQGE EELIGLTEKA  60
   61 LASGASECHI VDLKEEFVKD YIYPTMATGA IYEGTYLLGT SMARPIIAKA QVEVARKVGA 120
  121 DALCHGCTGK GNDQVRFEGC FAALAPDLKV IAPWREWTMQ SREDLLAYLA ERNIKTSASA 180
  181 TKIYSRDANA FHISHEGGEL EDPWNEPSKG VWTLTADPED APNQAEYVSL EVENGRVTKV 240
  241 NGEALTPYAA LMKLNAIAAP HGVGRIDITE NRLVGMKSRG CYETPGGTVM FAALRAIEEL 300
  301 VLDKTSRNWR EQVGAQMAHL VYDGRWFTPL CKSLLAASES LAESVNGEVV VKLYKGHAIA 360
  361 VKKRSPNSLY SEAFATFGED QVYDQKHAEG FIRLYSLASR IRALNAK

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Detection Method: PSI-BLAST
Confidence: 131.0
Match: 1j1zA
Description: Argininosuccinate synthetase, N-terminal domain; Argininosuccinate synthetase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
argininosuccinate synthase activity 5.55984418125277 bayes_pls_golite062009
ligase activity 2.54636182867584 bayes_pls_golite062009
catalytic activity 1.4716728594386 bayes_pls_golite062009
binding 0.949267645607863 bayes_pls_golite062009
protein binding 0.476576076629648 bayes_pls_golite062009
asparagine synthase (glutamine-hydrolyzing) activity 0.3673193848392 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.204705463374024 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle