YRC Public Data Repository - Protein Structure Prediction

Protein:	PNCC_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	424 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PNCC_SHEON.

Description	E-value	Query Range	Subject Range
CINA_THETN - Putative competence-damage inducible protein OS=Thermoanaerobacter tengcongensis GN=cinA PE=3 SV=1 CINA_CALS4 - Putative competence-damage inducible protein OS=Caldanaerobacter subterraneus subsp. tengcongensis (... gi\|254479113, gi... - gi\|254479113\|ref\|ZP_05092465.1\| competence/damage-inducible protein CinA N-terminal domain, putative...	416.0	[0..1]	[412..1]
CINA_HALOH - Putative competence-damage inducible protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM...	408.0	[0..1]	[408..1]
CINAL_NOSP7 - CinA-like protein OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_F5157 PE=3 SV=1	403.0	[0..1]	[410..1]
CINAL_TRIEI - CinA-like protein OS=Trichodesmium erythraeum (strain IMS101) GN=Tery_2662 PE=3 SV=1	403.0	[0..1]	[418..1]
gi\|241903212, gi... - gi\|241903212\|ref\|ZP_04787939.1\| competence/damage-inducible protein CinA [Thermoanaerobacter brockii... CINA_THEP3 - Putative competence-damage inducible protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 332...	403.0	[0..1]	[409..1]
gi\|242230825, gi... - gi\|242257649\|ref\|ZP_04802506.1\| competence/damage-inducible protein CinA [Thermoanaerobacter sp. X51... CINA_THEPX - Putative competence-damage inducible protein OS=Thermoanaerobacter sp. (strain X514) GN=cinA PE=3 SV...	401.0	[0..1]	[409..1]
CINA_CALS8 - Putative competence-damage inducible protein OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43...	400.0	[0..1]	[409..1]
gi\|86605264 - gi\|86605264\|ref\|YP_474027.1\| competence/damage-inducible protein CinA [Cyanobacteria bacterium Yello... gi\|86605264, gi\|... - gi\|86605264\|ref\|YP_474027.1\| competence/damage-inducible protein CinA [Synechococcus sp. JA-3-3Ab], ...	400.0	[0..3]	[408..12]
gi\|182380080, gi... - gi\|182380080\|gb\|EDT77559.1\| cinA family protein [Clostridium perfringens NCTC 8239], gi\|168217905\|re... CINA_CLOP1 - Putative competence-damage inducible protein OS=Clostridium perfringens (strain ATCC 13124 / DSM 756...	398.0	[0..1]	[409..1]
CINA_CLOPE - Putative competence-damage inducible protein OS=Clostridium perfringens (strain 13 / Type A) GN=cinA... gi\|170715118, gi... - gi\|170715118\|gb\|EDT27300.1\| cinA family protein [Clostridium perfringens CPE str. F4969], gi\|1682133... gi\|169299716, gi... - gi\|169342232\|ref\|ZP_02863315.1\| cinA family protein [Clostridium perfringens C str. JGS1495], gi\|169... gi\|177910023, gi... - gi\|182624813\|ref\|ZP_02952593.1\| putative competence/damage-inducible protein CinA N- domain [Clostri... CINA_CLOPE - Putative competence-damage inducible protein OS=Clostridium perfringens GN=cinA PE=3 SV=1	398.0	[0..1]	[409..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLEMICTGE EVLSGQIVDT NAAWFASTMM EHGIEIQRRV TVGDRLEDLI AVFQERSLHA  60
   61 DVILVNGGLG PTSDDMSAEA MAKAKGESLV ENSEWRQRLE DWFTRNNREM PVSNLKQAML 120
  121 PVSAVMVDNP VGTACGFRVK LNRAWLFFTP GVPFELKHMV KEQFIPFIRD EFNLDAKVAL 180
  181 KKLLTIGHGE SALADKIEPL ELPEGITIGY RSSMPHIEIK IFARGEKAIA LLPRVAGHIK 240
  241 MVLGTAVV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2nqnA
Description:	No description for 2nqnA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55991563183069	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [249-424]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEDKATLAEE IHFRLLNSGL TLSAAESCTG GMITSQLVDF PGSSSYLQHG LVTYSNESKV  60
   61 RVLGVNPATL DDHGAVSIPT VEEMAKGARA ILDSDFALAT SGIAGPDGGT EDKPVGTVAI 120
  121 ALATRSGVYS QMIKLPRRSR DLVRSLSAAV AYDMLRRELL SEAVIVDYQS IGRFSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.09691
Match:	2a9sA
Description:	The crystal structure of competence/damage inducible protein CihA from Agrobacterium tumefaciens
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	1.58937601934226	bayes_pls_golite062009
nucleic acid binding	1.56192708201192	bayes_pls_golite062009
binding	1.50931468629846	bayes_pls_golite062009
catalytic activity	0.295853503406924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: