YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371817, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371817, gi|....

Description	E-value	Query Range	Subject Range
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	232.0	[0..1]	[183..1]
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	231.0	[0..6]	[183..4]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	231.0	[0..1]	[183..1]
gi\|91713529, gi\|... - gi\|91791527\|ref\|YP_561178.1\| transcription termination/antitermination factor NusG [Shewanella denit...	231.0	[0..1]	[182..1]
gi\|114332617, gi... - gi\|114561324\|ref\|YP_748837.1\| NusG antitermination factor [Shewanella frigidimarina NCIMB 400], gi\|1...	231.0	[0..1]	[182..1]
gi\|161505371, gi... - gi\|161505371\|ref\|YP_001572483.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|167554342, gi... - gi\|205321448\|gb\|EDZ09287.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|161617284, gi... - gi\|161617284\|ref\|YP_001591249.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|168239843, gi... - gi\|197287542\|gb\|EDY26935.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTI - Transcription antitermination protein nusG OS=Salmonella typhi GN=nusG PE=3 SV=2 gi\|167995347, gi... - gi\|205326985\|gb\|EDZ13749.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|62182602, gi\|... - gi\|62182602\|ref\|YP_219019.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205346818, gi... - gi\|205346818\|gb\|EDZ33449.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|75240374, gi\|... - gi\|75240374\|ref\|ZP_00724314.1\| COG0250: Transcription antiterminator [Escherichia coli F11], gi\|1911... gi\|205335974, gi... - gi\|205335974\|gb\|EDZ22738.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_ECOL6 - Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / AT... gi\|29139428, gi\|... - gi\|29143793\|ref\|NP_807135.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... NUSG_SALTI - Transcription termination/antitermination protein NusG OS=Salmonella typhi GN=nusG PE=3 SV=2 NUSG_ECOL6 - Transcription antitermination protein nusG OS=Escherichia coli O6 GN=nusG PE=3 SV=2 NUSG_SALTY - Transcription termination/antitermination protein NusG OS=Salmonella typhimurium (strain LT2 / SGSC1... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|156935821, gi... - gi\|156935821\|ref\|YP_001439737.1\| transcription antitermination protein NusG [Enterobacter sakazakii ... gi\|152972839, gi... - gi\|152972839\|ref\|YP_001337985.1\| transcription antitermination protein NusG [Klebsiella pneumoniae s... gi\|16762305 - gi\|16762305\|ref\|NP_457922.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205354449, gi... - gi\|205354449\|ref\|YP_002228250.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|199605771, gi... - gi\|200388673\|ref\|ZP_03215285.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|213022866 - gi\|213022866\|ref\|ZP_03337313.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|207859326, gi... - gi\|207859326\|ref\|YP_002245977.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|91212813, gi\|... - gi\|91212813\|ref\|YP_542799.1\| transcription antitermination protein NusG [Escherichia coli UTI89], gi... gi\|213417733 - gi\|213417733\|ref\|ZP_03350853.1\| transcription antitermination protein NusG [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=nusG] [protein=transcription antitermination protein NusG] [protein_id=YP_005240427.1] [locati... gi\|110345909, gi... - gi\|110644317\|ref\|YP_672047.1\| transcription antitermination protein NusG [Escherichia coli 536], gi\|... gi\|213163867 - gi\|213163867\|ref\|ZP_03349577.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213585780 - gi\|213585780\|ref\|ZP_03367606.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213425733 - gi\|213425733\|ref\|ZP_03358483.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|170770133, gi... - gi\|170770133\|ref\|ZP_02904586.1\| transcription termination/antitermination factor NusG [Escherichia a... gi\|168467920, gi... - gi\|195629016\|gb\|EDX48408.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|194405932, gi... - gi\|194447628\|ref\|YP_002048135.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|117626246, gi... - gi\|117626246\|ref\|YP_859569.1\| transcription antitermination protein NusG [Escherichia coli APEC O1],... gi\|194442714, gi... - gi\|194442714\|ref\|YP_002043400.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194710918, gi... - gi\|194735416\|ref\|YP_002117051.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194456260, gi... - gi\|194469896\|ref\|ZP_03075880.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|198241913, gi... - gi\|198241913\|ref\|YP_002218065.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|197249353, gi... - gi\|197249353\|ref\|YP_002149059.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|227837563, gi... - gi\|227885489\|ref\|ZP_04003294.1\| transcription antitermination protein NusG [Escherichia coli 83972],... gi\|237702749, gi... - gi\|237702749\|ref\|ZP_04533230.1\| transcription antitermination protein nusG [Escherichia sp. 3_2_53FA... gi\|238892452, gi... - gi\|238892452\|ref\|YP_002917186.1\| transcription antitermination protein [Klebsiella pneumoniae NTUH-K... gi\|238913727 - gi\|238913727\|ref\|ZP_04657564.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213650883 - gi\|213650883\|ref\|ZP_03380936.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213623116 - gi\|213623116\|ref\|ZP_03375899.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|214001616 - gi\|214001616\|ref\|ZP_03412351.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213852740 - gi\|213852740\|ref\|ZP_03382272.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|218561048, gi... - gi\|218561048\|ref\|YP_002393961.1\| transcription antitermination protein NusG [Escherichia coli S88], ... gi\|215489314, gi... - gi\|215489314\|ref\|YP_002331745.1\| transcription antitermination protein NusG [Escherichia coli O127:H... gi\|224585690, gi... - gi\|224585690\|ref\|YP_002639489.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|218692263, gi... - gi\|218692263\|ref\|YP_002400475.1\| transcription antitermination protein NusG [Escherichia coli ED1a],...	230.0	[0..1]	[183..1]
gi\|229686981, gi... - gi\|229899996\|ref\|ZP_04515136.1\| transcription termination factor [Yersinia pestis biovar Orientalis ... gi\|238752784, gi... - gi\|238752784\|ref\|ZP_04614252.1\| Transcription antitermination protein nusG [Yersinia rohdei ATCC 433... gi\|238760251, gi... - gi\|238760251\|ref\|ZP_04621395.1\| Transcription antitermination protein nusG [Yersinia aldovae ATCC 35... gi\|165928331, gi... - gi\|165928331\|ref\|ZP_02224163.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166214413, gi... - gi\|166214413\|ref\|ZP_02240448.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|166012043, gi... - gi\|166012043\|ref\|ZP_02232941.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|238794964, gi... - gi\|77977799\|ref\|ZP_00833239.1\| COG0250: Transcription antiterminator [Yersinia intermedia ATCC 29909... gi\|238790611, gi... - gi\|77972254\|ref\|ZP_00827826.1\| COG0250: Transcription antiterminator [Yersinia frederiksenii ATCC 33... gi\|77635956, gi\|... - gi\|77635956\|ref\|ZP_00798035.1\| COG0250: Transcription antiterminator [Yersinia pestis Angola], gi\|16... gi\|77631229, gi\|... - gi\|77631229\|ref\|ZP_00793815.1\| COG0250: Transcription antiterminator [Yersinia pseudotuberculosis IP... Q66FQ7\|Q66FQ7_YERPS - Transcription antitermination protein nusG - Yersinia pseudotuberculosis gi\|108781528, gi... - gi\|108809615\|ref\|YP_653531.1\| transcription antitermination protein NusG [Yersinia pestis Antiqua], ... gi\|166957158, gi... - gi\|167422947\|ref\|ZP_02314700.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|108810380, gi... - gi\|229900555\|ref\|ZP_04515681.1\| transcription termination factor [Yersinia pestis Nepal516], gi\|2296... gi\|167048191, gi... - gi\|167402411\|ref\|ZP_02307871.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|21957175, gi\|... - gi\|22124394\|ref\|NP_667817.1\| transcription antitermination protein NusG [Yersinia pestis KIM], gi\|21... gi\|153997214, gi... - gi\|153997214\|ref\|ZP_02022321.1\| transcription antitermination protein [Yersinia pestis CA88-4125], g... gi\|170022592, gi... - gi\|170022592\|ref\|YP_001719097.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... NUSG_YERPE - Transcription termination/antitermination protein NusG OS=Yersinia pestis GN=nusG PE=3 SV=3 gi\|145212689, gi... - gi\|145600993\|ref\|YP_001165069.1\| transcription antitermination protein NusG [Yersinia pestis Pestoid... gi\|167426816, gi... - gi\|167426816\|ref\|ZP_02318569.1\| transcription termination/antitermination factor NusG [Yersinia pest... gi\|51587915, gi\|... - gi\|51594633\|ref\|YP_068824.1\| transcription antitermination protein NusG [Yersinia pseudotuberculosis... gi\|45442869, gi\|... - gi\|45442869\|ref\|NP_994408.1\| transcription antitermination protein NusG [Yersinia pestis biovar Micr... gi\|186893634, gi... - gi\|186893634\|ref\|YP_001870746.1\| transcription antitermination protein NusG [Yersinia pseudotubercul... gi\|218930757, gi... - gi\|218930757\|ref\|YP_002348632.1\| transcription antitermination protein NusG [Yersinia pestis CO92], ... gi\|165913811, gi... - gi\|89103179\|ref\|ZP_01175768.1\| COG0250: Transcription antiterminator [Yersinia pestis biovar Orienta... gi\|122087631, gi... - gi\|123440670\|ref\|YP_001004663.1\| transcription antitermination protein NusG [Yersinia enterocolitica... gi\|229837498, gi... - gi\|229837498\|ref\|ZP_04457660.1\| transcription termination factor [Yersinia pestis Pestoides A], gi\|2... gi\|229695800, gi... - gi\|229839434\|ref\|ZP_04459593.1\| transcription termination factor [Yersinia pestis biovar Orientalis ...	230.0	[0..1]	[183..1]
tr\|I0QLY7\|I0QLY7... - Transcription termination/antitermination protein nusG OS=Serratia sp. M24T3 GN=nusG PE=3 SV=1 gi\|84778627, gi\|... - gi\|85058107\|ref\|YP_453809.1\| transcription antitermination protein NusG [Sodalis glossinidius str. '...	230.0	[0..1]	[183..1]
gi\|238713530, gi... - gi\|77957017\|ref\|ZP_00821086.1\| COG0250: Transcription antiterminator [Yersinia bercovieri ATCC 43970...	229.0	[0..1]	[183..1]
gi\|56130232, gi\|... - gi\|56415975\|ref\|YP_153050.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|197364902, gi... - gi\|197364902\|ref\|YP_002144539.1\| transcription antitermination protein NusG [Salmonella enterica sub...	229.0	[0..1]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEAKEAKKR WYVVQAFSGY EGRVCKSLIE YIKMHGMEQY FGEVLVPTEE VIEMRAGQRR  60
   61 KSERKFFPGY VLVQMEMNDD SWHLVKSIPR VLGFIGGTSD RPAPISDREA DAILRRLQET 120
  121 TASPTHRVIF EPGEVVRVCD GPFADFNGTV EEVDYDKSRV KVSVMIFGRS TPVELDFSQV 180
  181 EKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.3828495299519	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
structural constituent of ribosome	2.40236111142017	bayes_pls_golite062009
structural molecule activity	2.11748533169546	bayes_pls_golite062009
nucleic acid binding	0.761013355804059	bayes_pls_golite062009
binding	0.302568764609847	bayes_pls_golite062009
DNA binding	0.302556727687398	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: