YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345614, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345614, gi|....

Description	E-value	Query Range	Subject Range
gi\|37681395, gi\|... - gi\|37681395\|ref\|NP_936004.1\| transposase and inactivated derivative [Vibrio vulnificus YJ016], gi\|37...	119.0	[0..1]	[144..9]
gi\|27364361, gi\|... - gi\|27364361\|ref\|NP_759889.1\| transposase [Vibrio vulnificus CMCP6], gi\|27360480\|gb\|AAO09416.1\|AE0168...	116.0	[0..1]	[144..4]
gi\|3025754 - gi\|3025754\|gb\|AAC12734.1\| paired box protein Pax-2 beta isoform [Branchiostoma floridae]	115.0	[0..5]	[144..28]
gi\|2765061 - gi\|2765061\|emb\|CAA71208.1\| paired box protein [Xenopus laevis]	112.0	[0..5]	[143..22]
gi\|4377875 - gi\|4377875\|gb\|AAD19292.1\| paired box protein pax2.1 splice variant [Danio rerio]	112.0	[0..5]	[143..25]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPDIAALV KSEKSARIRM RYLALLHFSE GHSRTAIASM LKVSRTSVNR WISTYLAQGL  60
   61 SGLDDAPNLG RPATLSTAQQ AKLKTFVQHQ SLSEQGGRLV AKDVGHFIQT EFGVTFKQTN 120
  121 LYRLLHQLGF SWITTRSRHP KQSEAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.39794
Match:	1k78A
Description:	Pax-5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
binding	1.095333525217	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: