YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371790, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371790, gi|....

Description	E-value	Query Range	Subject Range
gi\|82498927, gi\|... - gi\|82498927\|ref\|ZP_00884381.1\| ADP-ribose pyrophosphatase, putative [Caldicellulosiruptor saccharoly...	155.0	[0..4]	[183..1]
gi\|88944793, gi\|... - gi\|88944793\|ref\|ZP_01148017.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes [...	154.0	[0..3]	[181..1]
gi\|251810916, gi... - gi\|251810916\|ref\|ZP_04825389.1\| ADP-ribose diphosphatase [Staphylococcus epidermidis BCM-HMP0060], g... gi\|57866974, gi\|... - gi\|57866974\|ref\|YP_188639.1\| MutT/nudix family protein [Staphylococcus epidermidis RP62A], gi\|576376... gi\|27468101, gi\|... - gi\|27468101\|ref\|NP_764738.1\| ADP-ribose pyrophosphatase [Staphylococcus epidermidis ATCC 12228], gi\|...	151.0	[0..4]	[177..1]
gi\|15643937, gi\|... - gi\|4981730\|gb\|AAD36256.1\|AE001774_13 conserved hypothetical protein [Thermotoga maritima MSB8], gi\|1... gi\|7445034 - pir\|\|H72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)	151.0	[0..4]	[173..1]
gi\|167040190, gi... - gi\|167040190\|ref\|YP_001663175.1\| NUDIX hydrolase [Thermoanaerobacter sp. X514], gi\|166854430\|gb\|ABY9... gi\|241902783, gi... - gi\|241902783\|ref\|ZP_04787514.1\| NUDIX hydrolase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi... gi\|242258345, gi... - gi\|242258345\|ref\|ZP_04803159.1\| NUDIX hydrolase [Thermoanaerobacter sp. X513], gi\|242230130\|gb\|EES32... gi\|76796749, gi\|... - gi\|76796749\|ref\|ZP_00779103.1\| NUDIX hydrolase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	151.0	[0..4]	[178..1]
gi\|20807759, gi\|... - gi\|20807759\|ref\|NP_622930.1\| NTP pyrophosphohydrolase including oxidative damage repair enzyme [Ther... gi\|20807759 - gi\|20807759\|ref\|NP_622930.1\| NTP pyrophosphohydrolase including oxidative damage repair enzyme [Ther...	151.0	[0..4]	[178..1]
gi\|196251996, gi... - gi\|196251996\|ref\|ZP_03150660.1\| NUDIX hydrolase [Clostridium thermocellum DSM 4150], gi\|196198585\|gb... gi\|48858520, gi\|... - gi\|67916121\|ref\|ZP_00509842.1\| NUDIX hydrolase [Clostridium thermocellum ATCC 27405], gi\|67849923\|gb...	150.0	[0..4]	[178..1]
gi\|98662389 - gi\|98662389\|dbj\|GAA00716.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	148.0	[0..6]	[176..7]
gi\|70726418, gi\|... - gi\|70726418\|ref\|YP_253332.1\| ADP-ribose pyrophosphatase [Staphylococcus haemolyticus JCSC1435], gi\|6...	146.0	[0..4]	[177..1]
gi\|33566206 - gi\|33566206\|emb\|CAE37112.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596437 - gi\|33596437\|ref\|NP_884080.1\| hypothetical protein BPP1810 [Bordetella parapertussis 12822] gi\|33576711, gi\|... - gi\|33602272\|ref\|NP_889832.1\| hypothetical protein BB3297 [Bordetella bronchiseptica RB50], gi\|335767...	146.0	[0..5]	[180..20]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRHHKPEI LHTEVVAKSR LFQIEQVHLK FSNGVERQYE RLKGGGRGAV MVVPIHRGNM  60
   61 LLAREYAAGT DNYELGFPKG LIDPGEQAID AANRELQEEI GFGARKLTLL KELTLAPGYF 120
  121 SSKMQIFMAE DLYESRLEGD EPEPIDVVPW PLAEWEVLLN NIDFSESRSV SALFLAQKHL 180
  181 QLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1vhgA
Description:	Crystal structure of ADP compounds hydrolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.914814648797509	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.60834739024706	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.608343780811364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: