YRC Public Data Repository - Protein Structure Prediction

Protein:	HUTU_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	556 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HUTU_SHEON.

Description	E-value	Query Range	Subject Range
gi\|82716811, gi\|... - gi\|82736168\|ref\|ZP_00899028.1\| Urocanase [Pseudomonas putida F1], gi\|82716811\|gb\|EAP51865.1\| Urocana...	1095.0	[0..10]	[554..71]
HUTU_PHOLL - Urocanate hydratase OS=Photorhabdus luminescens subsp. laumondii GN=hutU PE=3 SV=1 HUTU_PHOLL - Urocanate hydratase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT...	1091.0	[0..11]	[555..13]
gi\|95113000 - gi\|95113000\|emb\|CAK17728.1\| urocanate hydratase [Pseudomonas entomophila L48] HUTU_PSEE4 - Urocanate hydratase OS=Pseudomonas entomophila (strain L48) GN=hutU PE=3 SV=1	1090.0	[0..10]	[554..11]
gi\|28855637, gi\|... - gi\|28872382\|ref\|NP_795001.1\| urocanate hydratase [Pseudomonas syringae pv. tomato str. DC3000], gi\|2...	1090.0	[0..3]	[555..55]
HUTU_PSEAB - Urocanate hydratase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hutU PE=3 SV=1 gi\|107104196 - gi\|107104196\|ref\|ZP_01368114.1\| hypothetical protein PaerPA_01005269 [Pseudomonas aeruginosa PACS2] gi\|84323816, gi\|... - gi\|84323816\|ref\|ZP_00971883.1\| COG2987: Urocanate hydratase [Pseudomonas aeruginosa 2192], gi\|254244... HUTU_PSEA8 - Urocanate hydratase OS=Pseudomonas aeruginosa (strain LESB58) GN=hutU PE=3 SV=1	1090.0	[0..9]	[554..10]
HUTU_PSEAE - Urocanate hydratase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... HUTU_PSEAE - Urocanate hydratase OS=Pseudomonas aeruginosa GN=hutU PE=1 SV=1	1089.0	[0..9]	[554..10]
HUTU_PSEU2 - Urocanate hydratase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hutU PE=3 SV=1	1089.0	[0..3]	[555..13]
gi\|77456588, gi\|... - gi\|77456588\|ref\|YP_346093.1\| urocanate hydratase [Pseudomonas fluorescens Pf0-1], gi\|77380591\|gb\|ABA...	1088.0	[0..10]	[554..13]
HUTU_PSESM - Urocanate hydratase OS=Pseudomonas syringae pv. tomato GN=hutU PE=3 SV=2 HUTU_PSESM - Urocanate hydratase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=hutU PE=3 SV=2	1088.0	[0..3]	[555..13]
gi\|11269432, gi\|... - gi\|409365\|gb\|AAA50311.1\| urocanase [Pseudomonas putida], pir\|\|T45008 urocanate hydratase (EC 4.2.1.4...	1086.0	[0..10]	[554..11]

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Predicted Domain #1

Region A:
Residues: [1-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKRHDPSRR IIAPHGSQLS CKSWLTEAPM RMLMNNLHPD VAERPEDLVV YGGIGRAARD  60
   61 WDCYDKIIEV LKRLEDDETL LVQSGKPVGV FRTHADAPRV LIANSNLVPH WANWEHFNEL 120
  121 DKQGLAMYGQ MTAGSWIYIG TQGIVQGTYE TFVSVAKQHF GGISKGKWIL TGGLGGMGGA 180
  181 QTLAGTMAGF SVLACEVDET RIDFRLRTRY VDKKATSLDE ALAMIEAANQ AGKPVSVGLL 240
  241 ANAADVFAEL VKRGITPDVV TDQTSAHDPL NGYLPQGWTM AQAADMRKTD EAAVVKAAKA 300
  301 SMAVQVQAML DLQAAGAATL DYGNNIRQMA FETGVKNAFD FPGFVPAYIR PLFCEGIGPF 360
  361 RWVALSGDPE DIYKTDAKVK ELIPDNPHLH NWLDMARERI AFQGLPARIC WVGLKDRARL 420
  421 AQAFNEMVKN GELSAPIVIG RDHLDSGSVA SPNRETESML DGSDAVSDWP LLNALLNTAS 480
  481 GATWVSLHHG GGVGMGFSQH SGVVIVCDGT ETAAKRVGRV LWNDPATGVM RHADAGYEIA 540
  541 KNCAKEQGLD LPMLKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1uwlA
Description:	1.76A Structure of Urocanate Hydratase from Pseudomonas putida
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
urocanate hydratase activity	5.85472683958843	bayes_pls_golite062009
catalytic activity	1.77011790035856	bayes_pls_golite062009
lyase activity	1.60171582052511	bayes_pls_golite062009
carbon-oxygen lyase activity	1.59787600505595	bayes_pls_golite062009
hydro-lyase activity	1.51511952879298	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: