YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24371658, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24371658, gi|....

Description	E-value	Query Range	Subject Range
gi\|186685052, gi... - gi\|23129256\|ref\|ZP_00111088.1\| COG1226: Kef-type K+ transport systems, predicted NAD-binding compone...	163.0	[0..3]	[231..102]
gi\|75703660, gi\|... - gi\|75909935\|ref\|YP_324231.1\| hypothetical protein Ava_3731 [Anabaena variabilis ATCC 29413], gi\|7570...	161.0	[0..3]	[231..102]
gi\|46580017, gi\|... - gi\|46580017\|ref\|YP_010825.1\| TrkA family potassium uptake protein [Desulfovibrio vulgaris subsp. vul...	160.0	[0..3]	[231..129]
gi\|241881279, gi... - gi\|241906686\|ref\|ZP_04791268.1\| TrkA-N domain protein [Desulfovibrio vulgaris RCH1], gi\|241881279\|gb... gi\|120602572, gi... - gi\|120602572\|ref\|YP_966972.1\| TrkA domain-containing protein [Desulfovibrio vulgaris subsp. vulgaris...	160.0	[0..3]	[231..126]
gi\|17130425, gi\|... - gi\|17228574\|ref\|NP_485122.1\| hypothetical protein all1079 [Nostoc sp. PCC 7120], gi\|17130425\|dbj\|BAB... gi\|25314198 - pir\|\|AD1941 hypothetical protein all1079 [imported] - Nostoc sp. (strain PCC 7120)	160.0	[0..3]	[231..102]
gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac... gi\|86554803, gi\|... - gi\|86606261\|ref\|YP_475024.1\| VIC family potassium channel protein [Synechococcus sp. JA-3-3Ab], gi\|8...	159.0	[0..3]	[231..123]
gi\|86609264, gi\|... - gi\|86609264\|ref\|YP_478026.1\| VIC family potassium channel protein [Synechococcus sp. JA-2-3B'a(2-13)... gi\|86609264 - gi\|86609264\|ref\|YP_478026.1\| potassium transporter, voltage-gated ion channel (VIC) family [Cyanobac...	158.0	[0..3]	[231..123]
gi\|33866383, gi\|... - gi\|33866383\|ref\|NP_897942.1\| VIC family potassium channel protein [Synechococcus sp. WH 8102], gi\|33...	157.0	[0..3]	[231..122]
gi\|68555006, gi\|... - gi\|94309253\|ref\|YP_582463.1\| sodium/hydrogen exchanger [Ralstonia metallidurans CH34], gi\|93353105\|g...	156.0	[0..2]	[232..426]
gi\|67857122, gi\|... - gi\|67921005\|ref\|ZP_00514524.1\| TrkA-N:TrkA-C:TrkA-C [Crocosphaera watsonii WH 8501], gi\|67857122\|gb\|...	155.0	[0..3]	[231..119]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHFTVIGLG RFGVAVSLEL IHLGHTVTGV DSDHKAVEKY VEVLTEAVIC DCADEAALRE  60
   61 LDLASSEVVI VAIGLDMQSS LLCTLALKNL DVQTIWVKAS NKAHHTILSK LGVARIIHPE 120
  121 EDMGIRVAQS LNYPMVNNFL AIGNGLYIVE IHIKAHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	2hmsA
Description:	No description for 2hmsA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.40143066098294	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.794265596378362	bayes_pls_golite062009
potassium ion transmembrane transporter activity	0.7917593970345	bayes_pls_golite062009
cation transmembrane transporter activity	0.667941911014379	bayes_pls_golite062009
ion transmembrane transporter activity	0.644377496622781	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.455628854268609	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.439757800700606	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.189869347204878	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [158-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQTTVGLLLG SLHDNASNEQ TNVVRNPKGK VAPLMVKREL TVFSKIDSEF ILYTEDALFL  60
   61 CGSRAELKLL APRLV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1vctA
Description:	Crystal structure of putative potassium channel related protein from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: