YRC Public Data Repository - Protein Structure Prediction

Protein:	YK55_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YK55_YEAST.

Description	E-value	Query Range	Subject Range
YOR062C - Protein of unknown function; similar to YKR075Cp and Reg1p; expression regulated by glucose and Rgt1... YO062_YEAST - Uncharacterized protein YOR062C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR062C ...	254.0	[0..1]	[126..1]
gi\|49528530, gi\|... - gi\|50293611\|ref\|XP_449217.1\| unnamed protein product [Candida glabrata], gi\|49528530\|emb\|CAG62191.1\|... gi\|49528530 - gi\|49528530\|emb\|CAG62191.1\| unnamed protein product [Candida glabrata]	212.0	[0..1]	[269..1]
gi\|49644957 - gi\|49644957\|emb\|CAG98529.1\| KLLA0F16489p [Kluyveromyces lactis] gi\|49644957, gi\|... - gi\|50311591\|ref\|XP_455821.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644957\|emb\|CAG9852...	163.0	[0..3]	[251..5]
gi\|44982895, gi\|... - gi\|45188078\|ref\|NP_984301.1\| ADR205Cp [Ashbya gossypii ATCC 10895], gi\|44982895\|gb\|AAS52125.1\| ADR20... gi\|44982895 - gi\|44982895\|gb\|AAS52125.1\| ADR205Cp [Ashbya gossypii ATCC 10895]	157.0	[0..3]	[120..2]
gi\|40744942, gi\|... - gi\|67903794\|ref\|XP_682153.1\| hypothetical protein AN8884.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	52.0	[0..2]	[117..122]
gi\|46101389, gi\|... - gi\|71022581\|ref\|XP_761520.1\| hypothetical protein UM05373.1 [Ustilago maydis 521], ref\|XP_402988.1\| ...	51.0	[0..28]	[152..32]
gi\|50547041, gi\|... - gi\|50547041\|ref\|XP_500990.1\| YALI0B16808p [Yarrowia lipolytica], gi\|49646856\|emb\|CAG83243.1\| unnamed... gi\|49646856 - gi\|49646856\|emb\|CAG83243.1\| YALI0B16808p [Yarrowia lipolytica]	50.0	[0..28]	[117..115]
gi\|59802836 - gi\|59802836\|gb\|AAX07633.1\| HEX2 protein-like protein [Magnaporthe grisea]	50.0	[0..18]	[152..134]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLDDTIIS YQNIMLLDNM TNYNKPAIDY FHHEFNDASL EISASWTLLL KMRKHKLLRL  60
   61 PSCSSEDVLD YNMYLVRLHH CLWRRWSINH YGLQNSKSNP LSINWNKETD VTVLYGPDLT 120
  121 NIDSNENEIS PVQNQIDQKQ TKNLKSALKK NTECWVTEEV DEINASIESN DNALVKLEDI 180
  181 SCPSSVDSHT SSIFDQH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [198-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STCTKISSID EDSEDLMNEK KEQFPRKLKF NQAVMKREID SKGTIRESLI NINDIQHSRH  60
   61 HRRHHRRHHH HHHQNSSHSD ETIKEAHYEF SNYTFGTMEE DIFYRNQVVF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits