YRC Public Data Repository - Protein Structure Prediction

Protein:	YIF5_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	627 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YIF5_YEAST.

Description	E-value	Query Range	Subject Range
YIL055C - Putative protein of unknown function YIF5_YEAST - Uncharacterized protein YIL055C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIL055C ...	0.0	[1..627]	[1..627]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-50	[60..343]	[1418..1687]
gi\|40217297, gi\|... - gi\|4808164\|emb\|CAB42795.1\| largest subunit of the RNA polymerase II complex [Drosophila guanche], gi...	5.0E-50	[55..370]	[1500..1840]
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	7.0E-50	[55..370]	[1422..1762]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	2.0E-46	[46..340]	[1441..1743]
gi\|9587193, gi\|9... - gi\|9587199\|gb\|AAF89203.1\|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura], gi\|95...	2.0E-45	[55..370]	[1500..1840]
gi\|4808162 - gi\|4808162\|emb\|CAB42796.1\| largest subunit of the RNA polymerase II complex [Drosophila madeirensis]	2.0E-45	[55..370]	[1500..1840]
gi\|7494259 - pir\|\|T18492 hypothetical protein C0805w - malaria parasite (Plasmodium falciparum) gi\|124505021, gi... - gi\|3758846\|emb\|CAB11131.1\| DNA-directed RNA polymerase II, putative [Plasmodium falciparum 3D7], gi\|...	8.0E-43	[137..369]	[2072..2388]
RpII215-PA - The gene RNA polymerase II 215kD subunit is referred to in FlyBase by the symbol Dmel\RpII215 (CG155...	4.0E-41	[51..370]	[1501..1838]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLEPHYSAK SAASASAFVA RSATESSTAS TKAAPRKKTY SQSNGIPIRI DNLPPGKTWA  60
   61 QVKYLIGGII YHTNILQVKM LPPMTSMVPP FITFQSCIVI LKNSIDNESL ENLLLTLNTY 120
  121 QWDYHDLFVY LLPYTNDSPS LRYPEISDSN NDVRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1f6wA_
Description:	Bile-salt activated lipase (cholesterol esterase)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-403]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APDETKRSIS PRYASHVSSV TPQPPSASTP PSQFFSFSPE VSLRKNENIT PLPTPVPVPV  60
   61 GVPPLAPPPH GPFSTSMLPM LGAPPGTVPN MQMPYQTTLP SPTAAATAGG PLASPTHYPR 120
  121 RRHFYHQNQS QFQKYMHNSP RNPDTGTGPR LSQQHHLSLR NNKINPSYNE ISALYNLNMA 180
  181 SNSNNNGNIP TTSTNGDDRA LQAKNGGTIT PSQTQINHKR LKHIFNEKSF RKQMTNRGMW 240
  241 QLKIINFP

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	11.82
Match:	1deqA
Description:	Fibrinogen
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [404-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYIPIEFLEK LSESDFNELM NQEKFTVIEI KEKGQLEKFG RLRWTVLKDF IKLKCPKLLR  60
   61 LQERQFLQQQ NEASLLNESM DALKISENEN TNGSANNSTY TNGGPRTSIN NTREFYVGVY 120
  121 EDHEEATLLR FELPEDELEE FNRNLPTTFA QSGNVSDSEG DSKAKYFKVS TIVYNAIVGF 180
  181 HDKELSDLTF ESLQDQEYSL GYKIHVMELP PFDEDEFENQ RQQF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits