YRC Public Data Repository - Protein Structure Prediction

Protein:	YB70_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	560 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YB70_YEAST.

Description	E-value	Query Range	Subject Range
YBR220C - Putative protein of unknown function; YBR220C is not an essential gene YB70_YEAST - Uncharacterized membrane protein YBR220C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	0.0	[1..560]	[1..560]
gi\|123996419, gi... - gi\|123996419\|gb\|ABM85811.1\| solute carrier family 33 (acetyl-CoA transporter), member 1 [synthetic c... SLC33A1 - solute carrier family 33 (acetyl-CoA transporter), member 1	0.0	[14..559]	[71..545]
ACATN_MOUSE - Acetyl-coenzyme A transporter 1 OS=Mus musculus GN=Slc33a1 PE=1 SV=1	0.0	[3..559]	[62..546]
CE06514 - Yeast YB70 like status:Partially_confirmed UniProt:Q22816 protein_id:CAA90728.1	0.0	[5..558]	[121..624]
CG9706-PB, CG9706-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9706 (CG9706, FBgn0036662). It is a protein...	0.0	[6..557]	[24..517]
SPBC21B10.09 - acetyl-CoA transporter YHZ9_SCHPO - Uncharacterized protein C21B10.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC21B1...	0.0	[1..557]	[35..508]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPKRKSGSL AKHDLPQFYL LIMLYLAQGI PVGLAFGTVP FLLKSLAKET SFTSLGIFSM  60
   61 ATYPYSLKII WSPIVDSLYN KRIGRRRSWI IPVQFVSGFV LWALGWCISQ GIIFDGVDDA 120
  121 FHNRGNGTLH SVSIKNLTWW FGLLVFLCAT QDIAVDGWAL TILSKESLSY ASTAQTIGLN 180
  181 IGYFMSFTIF LSLNSSDFAN KYFRNIPLDH GFISLGGYMK FSGMLYIVIT IYIIFCTKEK 240
  241 PYVE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [245-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLPKVEPINT SDGGSKPISI EYDDGDVVST QNTSSIKYIY RCFIKVLKLK SVRSLAFIHM  60
   61 ISKFAFQCNE AATNLKLLEQ GFKREDLAVT VLIDLPFEII FGYYVVKWSS DKDPMIRDNR 120
  121 RLRNSTGTNK VIKFLVGDAG VLTPWLWGFL GRLAAAVLGS YVVKQFPKDG EISTGYFCLV 180
  181 IFQHLLGSFM NTVQFIGISA FHTRVAD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [452-560]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVLGGTYMTL LNTLSNFGGT WPRLIIMSMI NYFTVYQCTI PGTNKVYVTH GGSMQACTEL  60
   61 LNGTVTILRD GYYITNLICI VVGLFLYFGY LKRKILHLQS LPISSWRCT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits