YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS24_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS24_YEAST.

Description	E-value	Query Range	Subject Range
gi\|125532355 - gi\|125532355\|gb\|EAY78920.1\| hypothetical protein OsI_34021 [Oryza sativa Indica Group] gi\|37535360, gi\|... - gi\|37535360\|ref\|NP_921982.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|31432...	1.0E-31	[7..224]	[4..211]
gi\|16876827, gi\|... - gi\|20127558\|ref\|NP_057494.2\| chromatin modifying protein 5 [Homo sapiens], gi\|16876827\|gb\|AAH16698.1...	3.0E-31	[1..206]	[1..210]
CHMP5_MOUSE - Charged multivesicular body protein 5 OS=Mus musculus GN=Chmp5 PE=1 SV=1 CHMP5_RAT - Charged multivesicular body protein 5 OS=Rattus norvegicus GN=Chmp5 PE=2 SV=1	3.0E-31	[1..206]	[1..210]
VPS24 - One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); forms ... gi\|207343483 - gi\|207343483\|gb\|EDZ70931.1\| YKL041Wp-like protein [Saccharomyces cerevisiae AWRI1631] VPS24_YEAST - Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	6.0E-30	[1..224]	[1..224]
VPS2C_ARATH - Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1	9.0E-30	[7..223]	[4..210]
CE06928 - WBGene00016497 status:Predicted TR:Q22916 protein_id:AAC25860.1	2.0E-29	[1..209]	[49..262]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYIKKAIWG PDPKEQQRRI RSVLRKNGRN IEKSLRELTV LQNKTQQLIK KSAKKNDVRT  60
   61 VRLYAKELYQ INKQYDRMYT SRAQLDSVRM KIDEAIRMNT LSNQMADSAG LMREVNSLVR 120
  121 LPQLRNTMIE LEKELMKSGI ISEMVDDTME SVGDVGEEMD EAVDEEVNKI VEQYTNEKFK 180
  181 NVDQVPTVEL AANEEEQEIP DEKVDEEADR MVNEMRERLR ALQN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	8.2
Match:	1av1A
Description:	Apolipoprotein A-I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits