| Protein: | UBP12_YEAST |
| Organism: | Saccharomyces cerevisiae S288c |
| Length: | 1254 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP12_YEAST.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1254] | [1..1254] |
|
|
0.0 | [87..1112] | [39..979] |
|
|
0.0 | [92..839] | [2..712] |
|
|
0.0 | [92..839] | [2..712] |
|
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0.0 | [92..839] | [2..741] |
|
|
0.0 | [92..875] | [2..746] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MGSSDVSSRE CSLVYNEDPD FTDGTTPCDR LGVDLMNVLD DKDEIKQESV PVSDREIEDT 60
61 ESDASAVSSF ASANELIAEP HAASETNLGT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.345 | a.4.1 | Homeodomain-like |
| View | Download | 0.308 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.306 | a.64.1 | Saposin |
| View | Download | 0.491 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.491 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.345 | a.4.1 | Homeodomain-like |
| View | Download | 0.308 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.306 | a.64.1 | Saposin |
| View | Download | 0.294 | a.64.1 | Saposin |
| View | Download | 0.292 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.274 | a.2.3 | Chaperone J-domain |
| View | Download | 0.274 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.215 | a.3.1 | Cytochrome c |
| View | Download | 0.211 | a.1.1 | Globin-like |
| View | Download | 0.200 | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [91-334] |
1 11 21 31 41 51
| | | | | |
1 NGQDGRNVLE QQRDVVARLI EENKETQKEG DKVCIVPKVW YDKFFDPDVT DPEDIGPINT 60
61 RMICRDFENF VLEDYNRCPY LSIAEPVFNF LSEIYGMTSG SYPVVTNLVI NQTTGELETE 120
121 YNKWFFRLHY LTEKQDGRKR RHGQDDSIMY LSMSALNLVR DLVEKSMNLF FEKADHLDVN 180
181 AVDFKIWFVS EGSDIATDSN VSTFLNSSYE ITPLQFLELP IKKLLIPDMF ENRLDKITSN 240
241 PSDL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.65407544330213 | bayes_pls_golite062009 |
| protein binding | 0.63630897700088 | bayes_pls_golite062009 |
|
Region A: Residues: [335-405] |
1 11 21 31 41 51
| | | | | |
1 VIEIKPIEGN HHWPSNYFAY NKLEPASGTT GLVNLGNTCY MNSALQCLVH IPQLRDYFLY 60
61 DGYEDEINEE N
|
| Detection Method: | |
| Confidence: | 18.958607 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| binding | 1.40860698445222 | bayes_pls_golite062009 |
| protein binding | 0.38968855779244 | bayes_pls_golite062009 |
|
Region A: Residues: [406-718] |
1 11 21 31 41 51
| | | | | |
1 PLGYHGYVAR AFSDLVQKLF QNRMSIMQRN AAFPPSMFKS TIGHFNSMFS GYMQQDSQEF 60
61 LAFLLDSLHE DLNRIIKKEY TEKPSLSPGD DVNDWNVVKK LADDTWEMHL KRNCSVITDL 120
121 FVGMYKSTLY CPECQNVSIT FDPYNDVTLP LPVDTVWDKT IKIFPMNSPP LLLEVELSKS 180
181 STYMDLKNYV GKMSGLDPNT LFGCEIFSNQ IYVNYESTES NAQFLTLQEL IKPADDVIFY 240
241 ELPVTNDNEV IVPVLNTRIE KGYKNAMLFG VPFFITLKED ELNNPGAIRM KLQNRFVHLS 300
301 GGYIPFPEPV GNR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [719-911] |
1 11 21 31 41 51
| | | | | |
1 TDFADAFPLL VEKYPDVEFE QYKDILQYTS IKVTDKDKSF FSIKILSVEK EQQFASNNRT 60
61 GPNFWTPISQ LNLDKATDID DKLEDVVKDI YNYSSLVDCA EGVLMQVDDE GDTEGSEAKN 120
121 FSKPFQSGDD EENKETVTNN ENVNNTNDRD EDMELTDDVE EDASTEPELT DKPEALDKIK 180
181 DSLTSTPFAI LSM
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [912-1035] |
1 11 21 31 41 51
| | | | | |
1 NDIIVCEWSE LGSNEAFSDD KIYNWENPAT LPNKELENAK LERSNAKERT ITLDDCLQLF 60
61 SKPEILGLTD SWYCPTCKEH RQATKQIQLW NTPDILLIHL KRFESQRSFS DKIDATVNFP 120
121 ITDL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.356 | 0.093 | ubiquitin-specific protease activity | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.264 | 0.092 | ubiquitin-specific protease activity | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.504 | 0.055 | ubiquitin-specific protease activity | b.61.1 | Avidin/streptavidin |
| View | Download | 0.230 | N/A | N/A | b.115.1 | Fucose-binding lectin II (PA-IIL) |
|
Region A: Residues: [1036-1171] |
1 11 21 31 41 51
| | | | | |
1 DLSRYVVYKD DPRGLIYDLY AVDNHYGGLG GGHYTAYVKN FADNKWYYFD DSRVTETAPE 60
61 NSIAGSAYLL FYIRRHKDGN GLGSSKLQEI IQKSRHGYDE RIKKIYDEQM KLYEFNKTDE 120
121 EEDVSDDMIE CNEDVQ
|
| Detection Method: | |
| Confidence: | 25.721246 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.540 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.516 | N/A | N/A | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.452 | N/A | N/A | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.442 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.418 | N/A | N/A | a.23.4 | Mitochondrial import receptor subunit Tom20 |
|
Region A: Residues: [1172-1254] |
1 11 21 31 41 51
| | | | | |
1 APEYSNRSLE VGHIETQDCN DEDDNDDGER TNSGRRKLRL LKKVYKNNSG LGSSSTSEIS 60
61 EGCPENEVAD LNLKNGVTLE SPE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | a.74.1 | Cyclin-like |
| View | Download | 0.452 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.540 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.516 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.418 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
| View | Download | 0.418 | a.42.1 | MDM2 |
| View | Download | 0.369 | a.74.1 | Cyclin-like |
| View | Download | 0.366 | d.15.6 | Superantigen toxins, C-terminal domain |
| View | Download | 0.354 | d.39.1 | Dynein light chain 8 (DLC8) |
| View | Download | 0.347 | a.77.1 | DEATH domain |
| View | Download | 0.323 | a.26.1 | 4-helical cytokines |
| View | Download | 0.313 | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.307 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.290 | a.74.1 | Cyclin-like |
| View | Download | 0.281 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.271 | a.64.1 | Saposin |
| View | Download | 0.264 | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.256 | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.250 | d.137.1 | Monooxygenase (hydroxylase) regulatory protein |
| View | Download | 0.242 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.233 | c.3.1 | FAD/NAD(P)-binding domain |
| View | Download | 0.228 | a.60.13 | Putative methyltransferase TM0872, insert domain |
| View | Download | 0.221 | a.159.2 | FF domain |
| View | Download | 0.220 | a.74.1 | Cyclin-like |
| View | Download | 0.208 | a.118.8 | TPR-like |
| View | Download | 0.206 | d.211.1 | Ankyrin repeat |
| View | Download | 0.203 | a.50.1 | Anaphylotoxins (complement system) |
