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View Structure Prediction Details

Protein: TMS1_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 473 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TMS1_YEAST.

Description E-value Query
Range
Subject
Range
TMS1 - Vacuolar membrane protein of unknown function that is conserved in mammals; predicted to contain ele...
gi|207346734 - gi|207346734|gb|EDZ73143.1| YDR105Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190404932 - gi|190404932|gb|EDV08199.1| membrane protein TMS1 [Saccharomyces cerevisiae RM11-1a]
TMS1_YEAST - Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1
gi|151942092 - gi|151942092|gb|EDN60448.1| conserved protein [Saccharomyces cerevisiae YJM789]
0.0 [1..473] [1..473]
SERINC3 - serine incorporator 3
gi|124000409, gi... - gi|124000409|gb|ABM87713.1| serine incorporator 3 [synthetic construct], gi|123993433|gb|ABM84318.1|...
0.0 [1..466] [1..470]
SERC1_MOUSE - Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1
0.0 [1..466] [1..450]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
0.0 [1..466] [5..454]
gi|5853323 - gi|5853323|gb|AAD54422.1| membrane protein TMS1d [Drosophila melanogaster]
0.0 [1..466] [1..462]

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Predicted Domain #1
Region A:
Residues: [1-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVISLPVS MAGSFVASCF GGCCSNLVTK TASSLGSSSL GTRLLYAVWL LLNSLISWVS  60
   61 YSANKSILWP GKTCTGTGEC GFFTVHRLNF ALGCLHLILA LVLTGVKSTN DVRAALQNSW 120
  121 WSLKFILYLC LIVLSFVIPN DFYIFFSKWV SVPSGAIFIL VGLILLVDFA HEWAETCISH 180
  181 VESEDEDSSF WQRFLVLGTT SMYTASIIMT VVMYVMFCHQ QCNMNQTAVT VNLILTVITL 240
  241 VLSVNPKIQE ANPKSGLAQS SMVSVYCTYL TMSAMSSEPD DKMCNPLVRS SGTRKFSIIL 300
  301 GSLFTFIAIA YTTTRAAANS AFQGTNTNGA IYLGNDIEYE GLGGQTRNQL RYEAIKQAVE 360
  361 EGSLPESALY DTAWLGTSSP TGAMDNQNDD ERTGTKYNYT LFHVIFFLAT QWIAILLTIN 420
  421 VTQDDVGDFI PVGRTYFYSW VKIVSAWICY ALYGWTVVAP AIMPDRFDYE NYY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 283.387216
Match: PF03348
Description: TMS membrane protein/tumour differentially expressed protein (TDE)

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle