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View Structure Prediction Details

Protein: SRR1L_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRR1L_YEAST.

Description E-value Query
Range		 Subject
Range
SRR1L_YEAST - SRR1-like protein BER1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BER1 PE=1 SV=1
BER1 - Protein involved in microtubule-related processes, N-acetylation; GFP-fusion protein localizes to th...
 0.0 [1..274] [1..274]
SRR1L_SCHPO - SRR1-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC14C8.13 PE=3 SV=1
SPBC14C8.13 - SRR1 family protein
 9.0E-56 [27..196] [43..211]
SRR1L_MOUSE, SRR... - (Q8K2M3) SRR1-like protein (Fragment), (Q8K2M3) SRR1-like protein (Fragment)
 8.0E-49 [20..185] [54..234]
SRR1_ARATH - Protein SENSITIVITY TO RED LIGHT REDUCED 1 OS=Arabidopsis thaliana GN=SRR1 PE=2 SV=2
 6.0E-41 [27..168] [62..215]
gi|220950122, gi... - gi|220960490|gb|ACL92781.1| CG7988-PA [synthetic construct], gi|220950122|gb|ACL87604.1| CG7988-PA [...
CG7988-PA - This gene is referred to in FlyBase by the symbol Dmel\CG7988 (CG7988, FBgn0038582). It is a protein...
 3.0E-34 [40..167] [67..193]

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Predicted Domain #1
Region A:
Residues: [1-194] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKASGTKF KKTGKKVVPA KAFEEIVQTN RDVLKKSAFL SDLLENLQPH LNNIKKIRCV  60
   61 AIGNFKEDFP ATYQFALLLE ITDYIKSEDE RDVVVSLYDP IFTKEEIQYL KSLGSKWLIE 120
  121 EEFSENDAID YESVLYFLPH APLDLTENIL SSQRPHLWLA NNMISHTDRY TKAKLCENYP 180
  181 NLSKLVHYLQ TNAP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [195-274] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEVKKAHDVD GFATFIPKRK RKNRNNSSKL KVTPSDIDYD SIAPKFKSCQ ILTDFDEGKY  60
   61 LKEKPWINSF SDLTLHAIEY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

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Created and Maintained by: Michael Riffle