Protein: | SLF1_YEAST |
Organism: | Saccharomyces cerevisiae S288c |
Length: | 447 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLF1_YEAST.
Description | E-value | Query Range |
Subject Range |
|
0.0 | [1..447] | [1..447] |
|
7.0E-63 | [29..360] | [118..488] |
|
3.0E-57 | [32..447] | [22..433] |
|
1.0E-51 | [22..446] | [29..449] |
|
2.0E-51 | [2..383] | [52..416] |
|
2.0E-49 | [263..444] | [5..198] |
|
8.0E-48 | [263..444] | [5..198] |
Region A: Residues: [1-257] |
1 11 21 31 41 51 | | | | | | 1 MSSQNLNDNP KNTSSAAEDK KKQTSSLKLA PIPTTSPWKS SSPDSNTVIP VEELRDISKT 60 61 AKPSKNGSGS IKLTSNTKWT PITPSVIISG SKDTNSKSGK NSKNSKTNKK MKKRGKYNND 120 121 INKKDFNGQT NSTSEISNVS NLESKPLDAN AKVNIHSSSG ATANGNIKRI TNNNNSTNGR 180 181 QSRNYQNRNG KTRYNNNSRH SQAANNAISF PNNYQARPEY IPNASHWLNN NSRNSYKQLS 240 241 YFRQQQYYNN INYQQQL |
Detection Method: | |
Confidence: | 14.16 |
Match: | 1i3qA |
Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [258-363] |
1 11 21 31 41 51 | | | | | | 1 QTPYYYSMEP IFKSIESIKN QIEFYFSEEN LKTDEFLRSK FKKANDGFIP MSLIGKFYRM 60 61 VNLSLGGDPN LILASMREVL QHKETNHLEI ALGSIEGAQK NMADDF |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Term | Confidence | Notes |
mRNA binding | 4.52007814408702 | bayes_pls_golite062009 |
RNA binding | 4.50438526063124 | bayes_pls_golite062009 |
nucleic acid binding | 3.64594243387558 | bayes_pls_golite062009 |
binding | 3.00411894202318 | bayes_pls_golite062009 |
structural constituent of ribosome | 2.95301685898669 | bayes_pls_golite062009 |
structural molecule activity | 2.78501986457503 | bayes_pls_golite062009 |
1.49431666307335 | bayes_pls_golite062009 | |
poly(U) RNA binding | 1.35467931535417 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
single-stranded RNA binding | 0.90573796517364 | bayes_pls_golite062009 |
transcription regulator activity | 0.737458867828906 | bayes_pls_golite062009 |
DNA binding | 0.691258294213766 | bayes_pls_golite062009 |
mRNA 3'-UTR binding | 0.599389001184667 | bayes_pls_golite062009 |
translation regulator activity | 0.38120065819101 | bayes_pls_golite062009 |
poly-pyrimidine tract binding | 0.32812362201346 | bayes_pls_golite062009 |
translation factor activity, nucleic acid binding | 0.128616879457381 | bayes_pls_golite062009 |
Region A: Residues: [364-447] |
1 11 21 31 41 51 | | | | | | 1 NPLENYFIRR ENWAEYAMES NFDENDDETE KYNIEKLLGP NDLDNYSYMG YPNFFPSNEN 60 61 GKKSQSYDQG EISRQFEQNL QIND |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.