YRC Public Data Repository - Protein Structure Prediction

Protein:	RM08_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM08_YEAST.

Description	E-value	Query Range	Subject Range
MRPL8 - Mitochondrial ribosomal protein of the large subunit RM08_YEAST - 54S ribosomal protein L8, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	6.0E-94	[1..238]	[1..238]
mrpl8 - mitochondrial ribosomal protein subunit L8 RM08_SCHPO - 54S ribosomal protein L8, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mr...	4.0E-63	[6..210]	[7..190]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	6.0E-52	[5..188]	[7..180]
RL17_CAUCN - 50S ribosomal protein L17 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplQ PE=3 SV=1 RL17_CAUCR - 50S ribosomal protein L17 OS=Caulobacter crescentus GN=rplQ PE=3 SV=1 RL17_CAUCR - 50S ribosomal protein L17 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplQ PE=3 SV=1	1.0E-43	[7..135]	[8..124]
gi\|221312278 - gi\|221312278\|ref\|ZP_03594083.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. NC... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis (strain 168) GN=rplQ PE=1 SV=2 gi\|221317212 - gi\|221317212\|ref\|ZP_03598506.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. JH... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis GN=rplQ PE=3 SV=2 gi\|221321475 - gi\|221321475\|ref\|ZP_03602769.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. SM...	3.0E-43	[6..127]	[3..120]
RL17_GEOSE - 50S ribosomal protein L17 OS=Geobacillus stearothermophilus GN=rplQ PE=1 SV=2	5.0E-43	[6..127]	[2..119]
gi\|183577845, gi... - gi\|183577845\|gb\|EDT98373.1\| ribosomal protein L17 [Streptococcus pneumoniae MLV-016], gi\|168576336\|r... gi\|242235245, gi... - gi\|242246183\|ref\|ZP_04800620.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae TCH8431/19A], gi... gi\|168493931, gi... - gi\|183576110\|gb\|EDT96638.1\| ribosomal protein L17 [Streptococcus pneumoniae CDC3059-06], gi\|16849393... RL17_STRPS - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplQ PE=3 SV=1 RL17_STRPI - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=rplQ PE=3 SV=1 RL17_STRPJ - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=rplQ PE=... RL17_STRP4 - 50S ribosomal protein L17 OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=rplQ PE=3 SV=1 gi\|168485996, gi... - gi\|183570921\|gb\|EDT91449.1\| ribosomal protein L17 [Streptococcus pneumoniae CDC1087-00], gi\|16848599... gi\|172042864, gi... - gi\|172042864\|gb\|EDT50910.1\| ribosomal protein L17 [Streptococcus pneumoniae CDC1873-00], gi\|16848387... RL17_STRP2 - 50S ribosomal protein L17 OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=rplQ PE... gi\|168492191, gi... - gi\|183573627\|gb\|EDT94155.1\| ribosomal protein L17 [Streptococcus pneumoniae CDC0288-04], gi\|16849219... gi\|168489714, gi... - gi\|183571835\|gb\|EDT92363.1\| ribosomal protein L17 [Streptococcus pneumoniae SP195], gi\|168489714\|ref... gi\|25295265 - pir\|\|H97898 50S ribosomal protein L17 [imported] - Streptococcus pneumoniae (strain R6) gi\|81096709, gi\|... - gi\|81096709\|ref\|ZP_00875043.1\| Ribosomal protein L17 [Streptococcus suis 89/1591], gi\|80977228\|gb\|EA... RL17_STRR6 - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rplQ PE=3 SV=1 gi\|149001656, gi... - gi\|149001656\|ref\|ZP_01826629.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP14-BS69], gi\|1... gi\|147757234, gi... - gi\|148996659\|ref\|ZP_01824377.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP11-BS70], gi\|1... gi\|148992814, gi... - gi\|148992814\|ref\|ZP_01822457.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP9-BS68], gi\|14... gi\|147926438, gi... - gi\|148987974\|ref\|ZP_01819437.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP6-BS73], gi\|14... gi\|147923783, gi... - gi\|148983636\|ref\|ZP_01816955.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP3-BS71], gi\|14... RL17_STRZJ - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain JJA) GN=rplQ PE=3 SV=1 RL17_STRZP - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain P1031) GN=rplQ PE=3 SV=1 RL17_STRP7 - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain 70585) GN=rplQ PE=3 SV=1 gi\|149017927, gi... - gi\|149017927\|ref\|ZP_01834386.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP23-BS72], gi\|1... RL17_STRZT - 50S ribosomal protein L17 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplQ PE=3 SV=1 gi\|149011107, gi... - gi\|149011107\|ref\|ZP_01832412.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP19-BS75], gi\|1... gi\|237649696 - gi\|237649696\|ref\|ZP_04523948.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae CCRI 1974] gi\|149005988, gi... - gi\|149005988\|ref\|ZP_01829717.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae SP18-BS74], gi\|1... gi\|237821394 - gi\|237821394\|ref\|ZP_04597239.1\| 50S ribosomal protein L17 [Streptococcus pneumoniae CCRI 1974M2]	6.0E-43	[6..127]	[3..128]
RL17_STREM - 50S ribosomal protein L17 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rplQ PE=3... RL17_STRPD - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rplQ PE=3 SV=1 RL17_STRPB - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rplQ PE=3 SV=1 RL17_STRPC - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rplQ PE=3 SV=1 RL17_STRPF - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rplQ PE=3 SV=1 RL17_STRP6 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN... gi\|15675947 - gi\|15675947\|ref\|NP_268487.1\| 50S ribosomal protein L17 [Streptococcus pyogenes M1 GAS] RL17_STRP3 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=r... RL17_STRPQ - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rplQ PE=3 SV=1 RL17_STRPM - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=rplQ PE=3 SV=1 gi\|71909885, gi\|... - gi\|71909885\|ref\|YP_281435.1\| 50S ribosomal protein L17 [Streptococcus pyogenes MGAS5005], gi\|7185266... RL17_STRPM - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M28 GN=rplQ PE=3 SV=1 RL17_STRP8 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M18 GN=rplQ PE=3 SV=1 RL17_STRP8 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=rplQ PE=3 SV=1 RL17_STRP6 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M6 GN=rplQ PE=3 SV=1 RL17_STRP3 - 50S ribosomal protein L17 OS=Streptococcus pyogenes serotype M3 GN=rplQ PE=3 SV=1 RL17_STRE4 - 50S ribosomal protein L17 OS=Streptococcus equi subsp. equi (strain 4047) GN=rplQ PE=3 SV=1 gi\|242390173, gi... - gi\|251781545\|ref\|YP_002995846.1\| 50S ribosomal protein L17 [Streptococcus dysgalactiae subsp. equisi...	7.0E-43	[6..127]	[3..128]
gi\|145638395, gi... - gi\|145638395\|ref\|ZP_01794005.1\| 50S ribosomal protein L17 [Haemophilus influenzae PittII], gi\|145272... gi\|145636638, gi... - gi\|145636638\|ref\|ZP_01792305.1\| 50S ribosomal protein L17 [Haemophilus influenzae PittHH], gi\|145270... gi\|145634785, gi... - gi\|145634785\|ref\|ZP_01790493.1\| 50S ribosomal protein L17 [Haemophilus influenzae PittAA], gi\|145267... gi\|144987069, gi... - gi\|145632162\|ref\|ZP_01787897.1\| 50S ribosomal protein L17 [Haemophilus influenzae 3655], gi\|14498706... gi\|144980077, gi... - gi\|145628302\|ref\|ZP_01784103.1\| 50S ribosomal protein L17 [Haemophilus influenzae 22.1-21], gi\|14498... gi\|145640902, gi... - gi\|145640902\|ref\|ZP_01796484.1\| 50S ribosomal protein L17 [Haemophilus influenzae R3021], gi\|1452744... gi\|42630369 - gi\|42630369\|ref\|ZP_00155913.1\| COG0203: Ribosomal protein L17 [Haemophilus influenzae R2846] RL17_HAEIG - 50S ribosomal protein L17 OS=Haemophilus influenzae (strain PittGG) GN=rplQ PE=3 SV=1 gi\|42631120 - gi\|42631120\|ref\|ZP_00156658.1\| COG0203: Ribosomal protein L17 [Haemophilus influenzae R2866] RL17_HAEIE - 50S ribosomal protein L17 OS=Haemophilus influenzae (strain PittEE) GN=rplQ PE=3 SV=1 RL17_HAEI8 - 50S ribosomal protein L17 OS=Haemophilus influenzae (strain 86-028NP) GN=rplQ PE=3 SV=1 gi\|145640902 - gi\|145640902\|ref\|ZP_01796484.1\| 50S ribosomal protein L17 [Haemophilus influenzae R3021] RL17_HAEIN - 50S ribosomal protein L17 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=r... RL17_HAEIN - 50S ribosomal protein L17 OS=Haemophilus influenzae GN=rplQ PE=3 SV=1 gi\|229812385, gi... - gi\|229844671\|ref\|ZP_04464810.1\| 50S ribosomal protein L17 [Haemophilus influenzae 6P18H1], gi\|229812... gi\|229845854, gi... - gi\|229845854\|ref\|ZP_04465966.1\| 50S ribosomal protein L17 [Haemophilus influenzae 7P49H1], gi\|229810...	7.0E-43	[7..137]	[8..126]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGIARKLS RDKAHRDALL KNLACQLFQH ESIVSTHAKC KEASRVAERI ITWTKRAITT  60
   61 SNSVAQAELK SQIQSQLFLA GDNRKLMKRL FSEIAPRYLE RPGGYTRVLR LEPRANDSAP 120
  121 QSVLELVDSP VMSESHTVNR GNLKMWLLVK SVINDDANQL P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	162.38764
Match:	1gd8A_
Description:	Prokaryotic ribosomal protein L17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.91574154879999	bayes_pls_golite062009
structural molecule activity	9.33953790706737	bayes_pls_golite062009
binding	1.23500675594838	bayes_pls_golite062009
protein binding	0.558431147696839	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [162-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNPLTLQNLH KVAKFKAEAQ LHGEIMLIKQ VLLKEMSLPY DEALENERTQ ALLKEVYSSS  60
   61 LPKKTKKPSS YVMVPRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: