YRC Public Data Repository - Protein Structure Prediction

Protein:	RCY1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	840 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCY1_YEAST.

Description	E-value	Query Range	Subject Range
RCY1_YEAST - Recyclin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RCY1 PE=1 SV=4 RCY1 - F-box protein involved in recycling plasma membrane proteins internalized by endocytosis; localized ...	0.0	[1..840]	[1..840]
gi\|3820457 - gi\|3820457\|emb\|CAA07559.1\| Sls2 [Yarrowia lipolytica]	0.0	[10..839]	[55..936]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..644]	[1..644]
POF6_SCHPO - F-box protein pof6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof6 PE=1 SV=1 pof6 - F-box protein Pof6	0.0	[96..840]	[172..872]
gi\|85099227 - gi\|85099227\|ref\|XP_960738.1\| hypothetical protein NCU03658 [Neurospora crassa OR74A] gi\|28922258, gi\|... - gi\|32404694\|ref\|XP_322960.1\| hypothetical protein ( (AL451013) related to Sls2 protein [Neurospora c...	0.0	[96..672]	[262..830]
gi\|16183151 - gi\|16183151\|gb\|AAL13643.1\| GH19049p [Drosophila melanogaster]	0.0	[357..822]	[64..487]
EXOC5 - exocyst complex component 5 gi\|114653201 - gi\|114653201\|ref\|XP_509969.2\| PREDICTED: SEC10 protein [Pan troglodytes]	0.0	[352..822]	[270..702]
EXOC5_RAT - Exocyst complex component 5 OS=Rattus norvegicus GN=Exoc5 PE=1 SV=1	0.0	[358..822]	[276..702]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDLLKVPEI VTNIASYLST VDYLSFQQVN KRVYAIINGK NDSKYWSLKL TRMGLQQVHS  60
   61 NEEEEITLLD ENDNQNSLRI FEIYKSFT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	2.60206
Match:	PF00646
Description:	F-box domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQNSKKIFVK FYRCYNSYAR KLYNNNLANF FPTSYSNDPL KQTRILNFIK KYNFSNKNDI  60
   61 ETFTRIETNF NILREIFINS VLKESELNYQ SNNLAAVARF MKILLISNEE SNAIEFFKSK 120
  121 ADLPPSLTVL PSNDELFWAE QPREEDSGGS TVIFNSKNLD TFLNQLRDFL NEKIKLADIL 180
  181 FKDEFPVILQ FIESFIQDIL LDILNNILLS YSEFLKENGK DSKANYECVP ELYFTFIKKF 240
  241 DTELNDSVNA GANFRKVVRD LLNLYLEPFV VNYMNQTTRV FESLINSQLA NYDTQVQDKQ 300
  301 REQNAKIYNT LKDQTDASSA SNNELPNDLS IITETSKTVP EADSKPSTIH QSVHSTDISN 360
  361 DKLDFLSSFT KIFKFSNN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [467-518]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENQRLKQQLQ LAYNLNLISN NLQNIKSLIS LDLCYKILQE TSEKTDQIYK FH

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [532-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QEIFKILITQ L

[Run NCBI BLAST on this sequence.]

Region C:
Residues: [688-840]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCAIRVVELL SNHCFLLTGA TDKGTIDVYQ QEIGERFFNE IVKHLKKCFI STEGAIWLIC  60
   61 DLNYFYDFIA NKLKQKNVVP YFVGLKSIGQ LYIISGKDSK ELGKLISDLG KFNGIFTQEE 120
  121 IYEFVQRRSD WVRVRKDVEK VMYGLGIRDC CIM

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.46
Match:	1n1bA
Description:	(+)-bornyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [519-531]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIESLLPLIK LRC

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [543-687]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKNHVKPAFE KAILLLQKYN PNEIEQIEIK FNSLSPANTQ VEPLVQFTEL INIGDIILQM  60
   61 ISIFYKNELI PKKIIDKNKD FLNDVIQLKK NFETSIDDFV AEGLNIGINK LMDEISFVFK 120
  121 TLQLPDDYNP PPPSRNSPIR DIKPT

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.46
Match:	1n1bA
Description:	(+)-bornyl diphosphate synthase
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [639-840]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDFVAEGLNI GINKLMDEIS FVFKTLQLPD DYNPPPPSRN SPIRDIKPTK CAIRVVELLS  60
   61 NHCFLLTGAT DKGTIDVYQQ EIGERFFNEI VKHLKKCFIS TEGAIWLICD LNYFYDFIAN 120
  121 KLKQKNVVPY FVGLKSIGQL YIISGKDSKE LGKLISDLGK FNGIFTQEEI YEFVQRRSDW 180
  181 VRVRKDVEKV MYGLGIRDCC IM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits