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View Structure Prediction Details

Protein: MER1_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 270 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MER1_YEAST.

Description E-value Query
Range
Subject
Range
MER1_YEAST - Meiotic recombination 1 protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MER1 PE=...
gi|151944334 - gi|151944334|gb|EDN62612.1| RNA-binding motif protein required for MRE2-dependent mRNA splicing [Sac...
gi|190409184 - gi|190409184|gb|EDV12449.1| RNA-binding motif protein required for MRE2-dependent mRNA splicing [Sac...
MER1 - Protein with RNA-binding motifs required for meiosis-specific mRNA splicing; required for chromosome...
gi|207341848 - gi|207341848|gb|EDZ69793.1| YNL210Wp-like protein [Saccharomyces cerevisiae AWRI1631]
0.0 [1..270] [1..270]

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Predicted Domain #1
Region A:
Residues: [1-180]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQHSPQPF CLDTKLVKLL EELQEGKQFN NKNIFPEKAL YLKLALDYSF FRKNLLEFCV  60
   61 HLDKIKGVIR PNYDTIYILC LLEVDLLNLV FTDNILEICL PRFVSREDLR VFNNTFYTYH 120
  121 DNRLRILQED FSQLFKKIKT KASVLCFTVE EIFLTNQEIL PQNSTVAELQ KSTNKVQTNG 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [181-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQRHDFIVTL EIKLNKTQIT FLIGAKGTRI ESLREKSGAS IKIIPISDKM TAHERNHPES  60
   61 VQQTILISGD LYSIALAVTS IESALITLDL 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 7.356547
Match: PF00013
Description: KH domain

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
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