YRC Public Data Repository - Protein Structure Prediction

Protein:	DCN1_YEAST
Organism:	Saccharomyces cerevisiae S288c
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCN1_YEAST.

Description	E-value	Query Range	Subject Range
DCUN1D1 - DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	1.0E-90	[4..268]	[2..250]
DCN1_YEAST - Defective in cullin neddylation protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G... DCN1 - Scaffold-type E3 ligase required for cullin neddylation and ubiquitin ligase activation; contains a ...	1.0E-90	[1..269]	[1..269]
DCNL1_MOUSE - DCN1-like protein 1 OS=Mus musculus GN=Dcun1d1 PE=1 SV=1 gi\|55741829 - ref\|NP_296372.2\| testis derived transcript 3 [Mus musculus]	6.0E-90	[4..268]	[2..250]
gi\|15292985 - gi\|15292985\|gb\|AAK93603.1\| unknown protein [Arabidopsis thaliana]	5.0E-77	[9..268]	[3..245]
gi\|220950918, gi... - gi\|220957914\|gb\|ACL91500.1\| CG13322-PA [synthetic construct], gi\|220950918\|gb\|ACL88002.1\| CG13322-PA... CG13322-PA, CG13... - This gene is referred to in FlyBase by the symbol Dmel\CG13322 (CG13322, FBgn0033784). It is a prote...	1.0E-72	[1..264]	[16..299]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNNKIKRKD ASPEQEAIES FTSLTKCDPK VSRKYLQRNH WNINYALNDY YDKEIGTFTD  60
   61 EVSTVAHPPV YPKELTQVFE HYINNNLFDI DSLVKFIEEL GYNLEDLATL CLAHLLGYKK 120
  121 LEEP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [125-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKREDFLSTW FMQGCSTISD MQECIKTLDV KLHEDLQYFT QIYNYAFNLI LDPNRKDIDT  60
   61 DEGIQYWKLF FQPEYPVRME PDLLEAWFRF LRDEGKTTIS KDTWRMLLLF FKRYPTIQKI 120
  121 ISDYDETAAW PFIIDEFYEC LQDQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.075721
Match:	PF03556
Description:	Domain of unknown function (DUF298)

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits