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View Structure Prediction Details

Protein: CTH2_YEAST
Organism: Saccharomyces cerevisiae S288c
Length: 285 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTH2_YEAST.

Description E-value Query
Range
Subject
Range
CTH2_YEAST - mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIS11 PE=1 SV=1
TIS11 - mRNA-binding protein expressed during iron starvation; binds to a sequence element in the 3'-untrans...
gi|190406165 - gi|190406165|gb|EDV09432.1| zinc finger protein CTH2 [Saccharomyces cerevisiae RM11-1a]
gi|151941298 - gi|151941298|gb|EDN59676.1| conserved protein [Saccharomyces cerevisiae YJM789]
1.0E-54 [1..285] [1..285]
gi|22326848, gi|... - gi|9759138|dbj|BAB09623.1| zinc finger protein 3 [Arabidopsis thaliana], gi|4689376|gb|AAD27875.1|AF...
4.0E-35 [14..279] [103..359]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-35 [14..238] [101..351]

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Predicted Domain #1
Region A:
Residues: [1-119]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWAQLSYTRP ESQKTDLTSL FSTDQEQNPL NDYQYQINIR ELEEYYNKTI LNEDNIQETS  60
   61 SEISSAVSFS PPKNTNAIQP GLLYDPQLMN PFLPSAHLNS TAPTTFKKKL EVQINPDYV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.250 0.267 cytoplasm f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.250 0.004 zinc ion binding f.1.4 Bcl-2 inhibitors of programmed cell death
View Download 0.215 0.001 zinc ion binding a.24.12 Outer surface protein C (OspC)
View Download 0.215 0.000 nucleus a.24.12 Outer surface protein C (OspC)
View Download 0.245 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain
View Download 0.245 N/A N/A a.121.1 Tetracyclin repressor-like, C-terminal domain

Predicted Domain #2
Region A:
Residues: [120-285]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKSSQLPLTS QNLQQLSQQK PKNDASFSSE KESSAQPKVK SQVQETPKQL YKTELCESFT  60
   61 LKGSCPYGSK CQFAHGLGEL KVKKSCKNFR TKPCVNWEKL GYCPYGRRCC FKHGDDNDIA 120
  121 VYVKAGTYCN VSSTSKQSDE KRSNGRGSAK KKNLNVKVKA LQRMTW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle