YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23100158, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23100158, gi|....

Description	E-value	Query Range	Subject Range
gi\|113461739, gi... - gi\|23467619\|ref\|ZP_00123199.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	197.0	[0..3]	[208..8]
gi\|7436631 - pir\|\|C64657 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) - Helicobacter pylori (strain ... gi\|2314248, gi\|1... - gi\|2314248\|gb\|AAD08142.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase (eda) [Helicobacter pylori 2669...	196.0	[0..2]	[206..4]
gi\|170718550, gi... - gi\|53728725\|ref\|ZP_00131830.2\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Haemophilus somn...	196.0	[0..3]	[208..8]
gi\|108563462, gi... - gi\|108563462\|ref\|YP_627778.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Helicobacter pylori HPAG1]...	195.0	[0..2]	[206..4]
gi\|109714266, gi... - gi\|109947045\|ref\|YP_664273.1\| 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate ...	194.0	[0..2]	[208..8]
gi\|92114857, gi\|... - gi\|92114857\|ref\|YP_574785.1\| 2-keto-3-deoxy-phosphogluconate aldolase [Chromohalobacter salexigens D...	193.0	[0..2]	[208..14]
gi\|49475976, gi\|... - gi\|49475976\|ref\|YP_034017.1\| 2-keto-3-deoxy-6-phosphogluconate aldolase [Bartonella henselae str. Ho...	191.0	[0..2]	[206..7]
gi\|56380333, gi\|... - gi\|56420491\|ref\|YP_147809.1\| 2-dehydro-3-deoxyphosphogluconate aldolase [Geobacillus kaustophilus HT...	191.0	[0..4]	[208..7]
gi\|59714170, gi\|... - gi\|59714170\|ref\|YP_206945.1\| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase [Vi...	190.0	[0..4]	[207..7]
gi\|32033966 - gi\|32033966\|ref\|ZP_00134222.1\| COG0800: 2-keto-3-deoxy-6-phosphogluconate aldolase [Actinobacillus p...	189.0	[0..3]	[206..9]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVIEGIQEE KVVAVIRKAN SDNIVPILEA LAKGGIHHVE ITAETPNVEN VIKTAVQNVN  60
   61 EKIQVGAGTV LDPETARTLI LAGATFIVSP TLNIKTVEMC QRYGVEHIPG VFTPTEVLTA 120
  121 YEHGARMVKI FPIDAVGPNY VKNIRGPLPH VKAMVTGGIT LDNIGDYLKA GSFAVGTGSS 180
  181 LVNAPLLQTK EDYDELTERA KQYIQSAKEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1wa3A
Description:	Mechanism of the Class I KDPG aldolase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-dehydro-3-deoxy-phosphogluconate aldolase activity	3.5031381823147	bayes_pls_golite062009
catalytic activity	2.67031204377352	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.840107349031025	bayes_pls_golite062009
lyase activity	0.740424046054758	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.643395146148785	bayes_pls_golite062009
transferase activity	0.464721888799972	bayes_pls_golite062009
aldehyde-lyase activity	0.351872954170322	bayes_pls_golite062009
transaldolase activity	0.337067552042715	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: