YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23099657, gi\|...
Organism:	Oceanobacillus iheyensis HTE831
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23099657, gi|....

Description	E-value	Query Range	Subject Range
gi\|89157723, gi\|... - gi\|89204150\|ref\|ZP_01182728.1\| GAF [Bacillus weihenstephanensis KBAB4], gi\|89157723\|gb\|EAR77714.1\| G...	137.0	[0..1]	[155..1]
gi\|21402701, gi\|... - gi\|65322025\|ref\|ZP_00394984.1\| COG1956: GAF domain-containing protein [Bacillus anthracis str. A2012... gi\|254687466 - gi\|254687466\|ref\|ZP_05151322.1\| hypothetical protein BantC_26970 [Bacillus anthracis str. CNEVA-9066... gi\|229266327, gi... - gi\|229601919\|ref\|YP_002868935.1\| hypothetical protein BAA_4917 [Bacillus anthracis str. A0248], gi\|2... gi\|229124223, gi... - gi\|229124223\|ref\|ZP_04253415.1\| hypothetical protein bcere0016_45080 [Bacillus cereus 95/8201], gi\|2... gi\|228935963, gi... - gi\|228935963\|ref\|ZP_04098773.1\| hypothetical protein bthur0009_44080 [Bacillus thuringiensis serovar... gi\|228929707, gi... - gi\|228929707\|ref\|ZP_04092724.1\| hypothetical protein bthur0010_43910 [Bacillus thuringiensis serovar... gi\|49187546, gi\|... - gi\|49187546\|ref\|YP_030799.1\| hypothetical protein BAS4552 [Bacillus anthracis str. Sterne], gi\|49181... gi\|227817446, gi... - gi\|227817446\|ref\|YP_002817455.1\| hypothetical protein BAMEG_4938 [Bacillus anthracis str. CDC 684], ... gi\|47505349, gi\|... - gi\|47530201\|ref\|YP_021550.1\| hypothetical protein GBAA4905 [Bacillus anthracis str. 'Ames Ancestor']... gi\|30264726, gi\|... - gi\|30264726\|ref\|NP_847103.1\| hypothetical protein BA4905 [Bacillus anthracis str. Ames], gi\|30259401... gi\|170129716, gi... - gi\|170705591\|ref\|ZP_02896055.1\| conserved hypothetical protein [Bacillus anthracis str. A0389], gi\|1... gi\|172083060, gi... - gi\|177651234\|ref\|ZP_02934065.1\| conserved hypothetical protein [Bacillus anthracis str. A0174], gi\|1... gi\|190568272, gi... - gi\|190568272\|ref\|ZP_03021180.1\| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I], ... gi\|164714430, gi... - gi\|165869601\|ref\|ZP_02214259.1\| conserved hypothetical protein [Bacillus anthracis str. A0488], gi\|1... gi\|167633935, gi... - gi\|167633935\|ref\|ZP_02392258.1\| conserved hypothetical protein [Bacillus anthracis str. A0442], gi\|1... gi\|167513904, gi... - gi\|167638087\|ref\|ZP_02396365.1\| conserved hypothetical protein [Bacillus anthracis str. A0193], gi\|1... gi\|170670387, gi... - gi\|170685923\|ref\|ZP_02877146.1\| conserved hypothetical protein [Bacillus anthracis str. A0465], gi\|1... gi\|254757431 - gi\|254757431\|ref\|ZP_05209458.1\| hypothetical protein BantA9_03911 [Bacillus anthracis str. Australia... gi\|254754599 - gi\|254754599\|ref\|ZP_05206634.1\| hypothetical protein BantV_19122 [Bacillus anthracis str. Vollum] gi\|254741803 - gi\|254741803\|ref\|ZP_05199490.1\| hypothetical protein BantKB_12433 [Bacillus anthracis str. Kruger B] gi\|254736766 - gi\|254736766\|ref\|ZP_05194472.1\| hypothetical protein BantWNA_16496 [Bacillus anthracis str. Western ...	136.0	[0..1]	[155..1]
gi\|195994116, gi... - gi\|196032687\|ref\|ZP_03100100.1\| conserved hypothetical protein [Bacillus cereus W], gi\|195994116\|gb\|... gi\|49332258, gi\|... - gi\|49480702\|ref\|YP_038702.1\| hypothetical protein BT9727_4387 [Bacillus thuringiensis serovar konkuk... gi\|42739766, gi\|... - gi\|42783836\|ref\|NP_981083.1\| hypothetical protein BCE_4790 [Bacillus cereus ATCC 10987], gi\|42739766... gi\|196043922, gi... - gi\|196043922\|ref\|ZP_03111159.1\| conserved hypothetical protein [Bacillus cereus 03BB108], gi\|1960252... gi\|228811371, gi... - gi\|228948384\|ref\|ZP_04110667.1\| hypothetical protein bthur0007_45100 [Bacillus thuringiensis serovar... gi\|118419019, gi... - gi\|118479794\|ref\|YP_896945.1\| GAF domain-containing protein [Bacillus thuringiensis str. Al Hakam], ... gi\|228842340, gi... - gi\|228917299\|ref\|ZP_04080854.1\| hypothetical protein bthur0012_45110 [Bacillus thuringiensis serovar... gi\|228689635, gi... - gi\|229093750\|ref\|ZP_04224849.1\| hypothetical protein bcere0021_44740 [Bacillus cereus Rock3-42], gi\|... gi\|228987904, gi... - gi\|228987904\|ref\|ZP_04148012.1\| hypothetical protein bthur0001_45710 [Bacillus thuringiensis serovar... gi\|229186912, gi... - gi\|229186912\|ref\|ZP_04314067.1\| hypothetical protein bcere0004_44530 [Bacillus cereus BGSC 6E1], gi\|... gi\|47565068, gi\|... - gi\|47565068\|ref\|ZP_00236111.1\| GAF domain-containing proteins [Bacillus cereus G9241], gi\|47557854\|g...	136.0	[0..1]	[155..1]
gi\|51974323, gi\|... - gi\|52140854\|ref\|YP_085975.1\| hypothetical protein BCZK4397 [Bacillus cereus E33L], gi\|51974323\|gb\|AA...	135.0	[0..1]	[155..1]
gi\|152977020, gi... - gi\|89201615\|ref\|ZP_01180353.1\| conserved hypothetical protein, possible GAF domain-containing protei...	134.0	[0..1]	[155..1]
gi\|30022728, gi\|... - gi\|30022728\|ref\|NP_834359.1\| GAF domain-containing protein [Bacillus cereus ATCC 14579], gi\|29898287... gi\|75760761, gi\|... - gi\|75760761\|ref\|ZP_00740782.1\| GAF domain-containing proteins [Bacillus thuringiensis serovar israel... gi\|228903172, gi... - gi\|228903172\|ref\|ZP_04067306.1\| hypothetical protein bthur0014_43370 [Bacillus thuringiensis IBL 422... gi\|228960921, gi... - gi\|228960921\|ref\|ZP_04122554.1\| hypothetical protein bthur0005_43760 [Bacillus thuringiensis serovar... gi\|228701494, gi... - gi\|229081906\|ref\|ZP_04214398.1\| hypothetical protein bcere0023_45340 [Bacillus cereus Rock4-2], gi\|2... gi\|218159617, gi... - gi\|218231660\|ref\|YP_002369448.1\| hypothetical protein BCB4264_A4762 [Bacillus cereus B4264], gi\|2181... gi\|228671442, gi... - gi\|229112119\|ref\|ZP_04241662.1\| hypothetical protein bcere0018_43620 [Bacillus cereus Rock1-15], gi\|... gi\|228653628, gi... - gi\|229129937\|ref\|ZP_04258903.1\| hypothetical protein bcere0015_43770 [Bacillus cereus BDRD-Cer4], gi... gi\|228636324, gi... - gi\|229147214\|ref\|ZP_04275572.1\| hypothetical protein bcere0012_43500 [Bacillus cereus BDRD-ST24], gi... gi\|229152848, gi... - gi\|229152848\|ref\|ZP_04281031.1\| hypothetical protein bcere0011_43800 [Bacillus cereus m1550], gi\|228...	134.0	[0..1]	[155..1]
gi\|15615770, gi\|... - gi\|15615770\|ref\|NP_244074.1\| hypothetical protein BH3208 [Bacillus halodurans C-125], gi\|10175831\|db... gi\|25322149 - pir\|\|H84050 hypothetical protein BH3208 [imported] - Bacillus halodurans (strain C-125)	131.0	[0..1]	[156..1]
gi\|89085180, gi\|... - gi\|89100090\|ref\|ZP_01172959.1\| hypothetical protein B14911_23755 [Bacillus sp. NRRL B-14911], gi\|890...	131.0	[0..1]	[159..1]
gi\|56421335, gi\|... - gi\|56421335\|ref\|YP_148653.1\| hypothetical protein GK2800 [Geobacillus kaustophilus HTA426], gi\|56381...	130.0	[0..1]	[158..1]
gi\|52786834, gi\|... - gi\|52786834\|ref\|YP_092663.1\| hypothetical protein BLi03108 [Bacillus licheniformis ATCC 14580], gi\|5...	129.0	[0..1]	[156..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEQKNYSGE KAKDYELLIK QLDALSEGEN NKIALLSNAS ALLNQFLTEV NWVGFYLWEE  60
   61 NELILGPFQG LPACIRIPYG KGVCGTAVSE QQTQRVDDVH AFPGHIACDG ATNSEIVVPI 120
  121 TINNQIYGVL DIDSPINNRF DEEDQYFLEK FVLHLTKHLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.221849
Match:	1vhmA
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10915247373974	bayes_pls_golite062009
transcription regulator activity	1.5060301152751	bayes_pls_golite062009
nucleic acid binding	1.32736924614801	bayes_pls_golite062009
DNA binding	1.31562572870243	bayes_pls_golite062009
transcription factor activity	1.09596276636897	bayes_pls_golite062009
protein binding	0.0688725708976988	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: