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View Structure Prediction Details

Protein: ENSOCUP000000217...
Organism: Oryctolagus cuniculus
Length: 136 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSOCUP000000217....

Description E-value Query
Range		 Subject
Range
gi|60653339 - gi|60653339|gb|AAX29364.1| ribosomal protein L27 [synthetic construct]
 6.0E-58 [1..136] [1..136]
gi|445615 - gi|445615|prf||1909362A ribosomal protein L27
 3.0E-57 [1..136] [1..136]
RL27_HIPCM - 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2
 4.0E-57 [1..136] [1..136]
RL27_CANLF - 60S ribosomal protein L27 OS=Canis lupus familiaris GN=RPL27 PE=2 SV=3
 6.0E-57 [1..136] [1..136]
gi|109512048, gi... - gi|109512048|ref|XP_001068936.1| PREDICTED: similar to ribosomal protein L27 [Rattus norvegicus], gi...
 8.0E-57 [1..136] [1..136]
RL27_DANRE - 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3
 2.0E-56 [1..136] [1..136]
gi|148235638, gi... - gi|34193964|gb|AAH56506.1| Rpl27-prov protein [Xenopus laevis], gi|148235638|ref|NP_001080423.1| rib...
gi|62859151, gi|... - gi|89268262|emb|CAJ82533.1| ribosomal protein L27 [Xenopus tropicalis], gi|62859151|ref|NP_001016180...
 3.0E-56 [1..136] [1..136]
gi|82907223, gi|... - gi|94382507|ref|XP_995001.1| PREDICTED: similar to ribosomal protein L27 [Mus musculus], gi|82907223...
 3.0E-56 [1..136] [1..136]
RL27_ICTPU - 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
 1.0E-55 [1..136] [1..136]

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Predicted Domain #1
Region A:
Residues: [1-136] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFMKPGKV VLVLAGRYSG RKAVIVKNID DGTSDRPYSH ALVAGIDRYP RKVTAAMGKK  60
   61 KIAKRSKIKS FVKVYNYNHL MPTRYSVDIP LDKTVVNKDV FRDPALKRKA RREAKVKFEE 120
  121 RYKTGKNKWF FQKLRF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.09
Match: 2joyA
Description: No description for 2joyA was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.33175622373475 bayes_pls_golite062009
structural molecule activity 8.78104488316498 bayes_pls_golite062009
translation elongation factor activity 2.67300686401704 bayes_pls_golite062009
binding 1.53082494948413 bayes_pls_golite062009
RNA binding 1.34286989242843 bayes_pls_golite062009
nucleic acid binding 1.34250569976274 bayes_pls_golite062009
transcription regulator activity 1.24801565562229 bayes_pls_golite062009
DNA binding 0.817602006068725 bayes_pls_golite062009
protein binding 0.247509245072821 bayes_pls_golite062009
transcription factor activity 0.151888933180377 bayes_pls_golite062009
translation regulator activity 0.084754562593104 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.0564075582229911 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
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