YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808937
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808937.

Description	E-value	Query Range	Subject Range
gi\|76795902, gi\|... - gi\|76795902\|ref\|ZP_00778272.1\| regulatory protein, DeoR [Thermoanaerobacter ethanolicus ATCC 33223],...	234.0	[0..1]	[268..7]
gi\|32472050, gi\|... - gi\|32472050\|ref\|NP_865044.1\| putative aga operon transcriptional repressor [Rhodopirellula baltica S...	228.0	[0..1]	[267..1]
gi\|82500790, gi\|... - gi\|82500790\|ref\|ZP_00886187.1\| regulatory protein, DeoR [Caldicellulosiruptor saccharolyticus DSM 89...	224.0	[0..1]	[251..1]
gi\|91191480, gi\|... - gi\|91223394\|ref\|ZP_01258659.1\| transcriptional regulator, DeoR family protein [Vibrio alginolyticus ...	223.0	[0..1]	[262..1]
gi\|254229357, gi... - gi\|75855918\|ref\|ZP_00763557.1\| COG1349: Transcriptional regulators of sugar metabolism [Vibrio sp. E...	222.0	[0..1]	[262..1]
gi\|89074567, gi\|... - gi\|89074567\|ref\|ZP_01161039.1\| transcriptional regulator, DeoR family protein [Photobacterium sp. SK...	222.0	[0..1]	[259..1]
gi\|77978684, gi\|... - gi\|77978684\|ref\|ZP_00834110.1\| COG1349: Transcriptional regulators of sugar metabolism [Yersinia int...	222.0	[0..1]	[252..1]
gi\|255054070, gi... - gi\|255054070\|ref\|ZP_05306318.1\| transcriptional regulator, DeoR family [Pectobacterium wasabiae WPP1... gi\|253690290, gi... - gi\|253690290\|ref\|YP_003019480.1\| transcriptional regulator, DeoR family [Pectobacterium carotovorum ... gi\|50123057, gi\|... - gi\|50123057\|ref\|YP_052224.1\| DNA-binding transcriptional repressor GlpR [Pectobacterium atrosepticum...	221.0	[0..1]	[252..1]
gi\|90326295, gi\|... - gi\|90412720\|ref\|ZP_01220721.1\| putative glycerol-3-phosphate repressor protein [Photobacterium profu...	221.0	[0..1]	[259..1]
gi\|54307380, gi\|... - gi\|54307380\|ref\|YP_128400.1\| putative glycerol-3-phosphate repressor protein [Photobacterium profund...	221.0	[0..1]	[259..1]

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Predicted Domain #1

Region A:
Residues: [1-62]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGEERRLKI AEIISKDKSI SVSELSKLFN VSESTIRRDL HVLEEKGFIQ RTHGGAILKT  60
   61 GT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2p5vA
Description:	No description for 2p5vA was found.

Predicted Domain #2

Region A:
Residues: [63-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYEPAFFEKE EVELEAKRKI GRIAASLIEE GDTILLDSGT TTLEIARNLK NMRLTVVTNS  60
   61 PLIAIELSKY EDIELIVTGG IQRWRTKALV GPIAEMVIRQ FKVDKAFIGT NAISFEDGLM 120
  121 TPDLIEANTK KTMIEVASEV YVVADHTKFG KKSFVKFADL KDITAIITDD EIDYEVVKKY 180
  181 EQANVEILNF ERDEDDDNNS DSKSSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.154902
Match:	2f8mA
Description:	Ribose 5-phosphate isomerase from Plasmodium falciparum
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits