YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808550
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808550.

Description	E-value	Query Range	Subject Range
gi\|167036913, gi... - gi\|76796513\|ref\|ZP_00778873.1\| PemK-like protein [Thermoanaerobacter ethanolicus ATCC 33223], gi\|765... gi\|167039618, gi... - gi\|167039618\|ref\|YP_001662603.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter s... gi\|242230427, gi... - gi\|242258050\|ref\|ZP_04802887.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter sp... gi\|241903946, gi... - gi\|241903946\|ref\|ZP_04788660.1\| transcriptional modulator of MazE/toxin, MazF [Thermoanaerobacter br...	155.0	[0..3]	[118..1]
gi\|125975181, gi... - gi\|67916939\|ref\|ZP_00510624.1\| PemK-like protein [Clostridium thermocellum ATCC 27405], gi\|67849109\|... gi\|196254205, gi... - gi\|196254205\|ref\|ZP_03152772.1\| transcriptional modulator of MazE/toxin, MazF [Clostridium thermocel...	154.0	[0..3]	[117..1]
gi\|149951696, gi... - gi\|77686610\|ref\|ZP_00801948.1\| PemK-like protein [Alkaliphilus metalliredigenes QYMF], gi\|77637584\|g...	148.0	[0..3]	[118..1]
gi\|89085884, gi\|... - gi\|89099498\|ref\|ZP_01172374.1\| hypothetical protein B14911_20010 [Bacillus sp. NRRL B-14911], gi\|890...	147.0	[0..3]	[118..1]
gi\|255332966, gi... - gi\|255332966\|ref\|ZP_05373956.1\| transcriptional modulator of MazE/toxin, MazF [Geobacillus sp. Y4.1M... gi\|229329495, gi... - gi\|229499569\|ref\|ZP_04393252.1\| transcriptional modulator of MazE/toxin, MazF [Geobacillus sp. Y412M... gi\|220709396, gi... - gi\|221086399\|ref\|ZP_03555941.1\| transcriptional modulator of MazE/toxin, MazF [Geobacillus sp. Y412M... gi\|56418768, gi\|... - gi\|56418768\|ref\|YP_146086.1\| hypothetical protein GK0233 [Geobacillus kaustophilus HTA426], gi\|56378... gi\|212638048, gi... - gi\|212638048\|ref\|YP_002314568.1\| Toxin-antitoxin addiction module toxin component MazF (an endoRNAse... gi\|134265396, gi... - gi\|138893883\|ref\|YP_001124336.1\| transcriptional regulator PemK family [Geobacillus thermodenitrific... gi\|196250543, gi... - gi\|196250543\|ref\|ZP_03149233.1\| transcriptional modulator of MazE/toxin, MazF [Geobacillus sp. G11MC... gi\|239806078, gi... - gi\|239825785\|ref\|YP_002948409.1\| transcriptional modulator of MazE/toxin, MazF [Geobacillus sp. WCH7...	147.0	[0..3]	[118..1]
gi\|25500476 - pir\|\|G96960 pemK family of DNA-binding proteins [imported] - Clostridium acetobutylicum gi\|15893785, gi\|... - gi\|15893785\|ref\|NP_347134.1\| PemK family DNA-binding protein [Clostridium acetobutylicum ATCC 824], ...	147.0	[0..1]	[117..1]
gi\|158141494, gi... - gi\|158321295\|ref\|YP_001513802.1\| transcriptional modulator of MazE/toxin, MazF [Alkaliphilus oremlan...	145.0	[0..3]	[118..1]
gi\|52784373, gi\|... - gi\|52784373\|ref\|YP_090202.1\| YdcE [Bacillus licheniformis ATCC 14580], gi\|52346875\|gb\|AAU39509.1\| Yd...	145.0	[0..3]	[118..1]
ENDOA_BACSU - Endoribonuclease EndoA OS=Bacillus subtilis (strain 168) GN=ndoA PE=1 SV=1 gi\|221312611 - gi\|221312611\|ref\|ZP_03594416.1\| YdcE [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi\|221317534 - gi\|221317534\|ref\|ZP_03598828.1\| YdcE [Bacillus subtilis subsp. subtilis str. JH642] gi\|221321810 - gi\|221321810\|ref\|ZP_03603104.1\| YdcE [Bacillus subtilis subsp. subtilis str. SMY] ENDOA_BACSU - mRNA interferase EndoA OS=Bacillus subtilis GN=ndoA PE=1 SV=1 gi\|154350820, gi... - gi\|154684969\|ref\|YP_001420130.1\| YdcE [Bacillus amyloliquefaciens FZB42], gi\|154350820\|gb\|ABS72899.1...	144.0	[0..3]	[118..1]
gi\|25489370 - pir\|\|B83715 hypothetical protein BH0522 [imported] - Bacillus halodurans (strain C-125) gi\|10173135, gi\|... - gi\|15613085\|ref\|NP_241388.1\| hypothetical protein BH0522 [Bacillus halodurans C-125], gi\|10173135\|db...	144.0	[0..3]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMVVKRGDL FYADLSPVIG SEQGGIRPVL IIQNDIGNKY SPTVIVAAIT SQINKAKLPT  60
   61 HVEINGAEYG LQKDSVILLE QIRTIDKKRL REKIGHLDQE MMEKVNEALQ ISLGLIDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1ne8A
Description:	PemK-like protein YdcE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.6695513763642	bayes_pls_golite062009
nucleic acid binding	1.29845490386609	bayes_pls_golite062009
DNA binding	1.250225226827	bayes_pls_golite062009
binding	1.07332947937787	bayes_pls_golite062009
transcription factor activity	1.06504946809994	bayes_pls_golite062009
catalytic activity	0.705204990122558	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: