YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20808407
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20808407.

Description	E-value	Query Range	Subject Range
GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis GN=glpP PE=4 SV=1 GLPP_BACSU - Glycerol uptake operon antiterminator regulatory protein OS=Bacillus subtilis (strain 168) GN=glpP P...	248.0	[0..12]	[187..7]
gi\|52144289, gi\|... - gi\|52144289\|ref\|YP_082538.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|49183980, gi\|... - gi\|49183980\|ref\|YP_027232.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|49480162, gi\|... - gi\|49480162\|ref\|YP_035284.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus thur... gi\|30254762, gi\|... - gi\|30261148\|ref\|NP_843525.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|47526303, gi\|... - gi\|47526303\|ref\|YP_017652.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus anth... gi\|227007800, gi... - gi\|227816120\|ref\|YP_002816129.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|225862973, gi... - gi\|225862973\|ref\|YP_002748351.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|228944756, gi... - gi\|228944756\|ref\|ZP_04107120.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228827118, gi... - gi\|228932428\|ref\|ZP_04095309.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228926173, gi... - gi\|228926173\|ref\|ZP_04089248.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228913714, gi... - gi\|228913714\|ref\|ZP_04077340.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|229183335, gi... - gi\|229183335\|ref\|ZP_04310563.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228645682, gi... - gi\|229137825\|ref\|ZP_04266427.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229120645, gi... - gi\|229120645\|ref\|ZP_04249889.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229090076, gi... - gi\|229090076\|ref\|ZP_04221327.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|254734208 - gi\|254734208\|ref\|ZP_05191921.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254725582 - gi\|254725582\|ref\|ZP_05187364.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|229600126, gi... - gi\|229600126\|ref\|YP_002865578.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|228588189, gi... - gi\|229195334\|ref\|ZP_04322106.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|254758582 - gi\|254758582\|ref\|ZP_05210609.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254753485 - gi\|254753485\|ref\|ZP_05205521.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|254740145 - gi\|254740145\|ref\|ZP_05197837.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|118476640, gi... - gi\|118476640\|ref\|YP_893791.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus thu... gi\|218539814, gi... - gi\|218902222\|ref\|YP_002450056.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|221238822, gi... - gi\|222094764\|ref\|YP_002528824.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|196044385, gi... - gi\|196044385\|ref\|ZP_03111621.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|217068312, gi... - gi\|217958615\|ref\|YP_002337163.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|190562303, gi... - gi\|190566751\|ref\|ZP_03019668.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus a... gi\|196031803, gi... - gi\|196037561\|ref\|ZP_03104872.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c...	246.0	[0..11]	[187..5]
gi\|47564990, gi\|... - gi\|47564990\|ref\|ZP_00236034.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ce...	246.0	[0..11]	[187..5]
gi\|228951505, gi... - gi\|228951505\|ref\|ZP_04113611.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228839765, gi... - gi\|228919864\|ref\|ZP_04083220.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|228657024, gi... - gi\|229126444\|ref\|ZP_04255459.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228674854, gi... - gi\|229108599\|ref\|ZP_04238211.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|218232750, gi... - gi\|218232750\|ref\|YP_002365797.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus ... gi\|229042878, gi... - gi\|229042878\|ref\|ZP_04190613.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228802279, gi... - gi\|228957401\|ref\|ZP_04119157.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus thuri... gi\|229189225, gi... - gi\|229189225\|ref\|ZP_04316249.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|29894731, gi\|... - gi\|30019188\|ref\|NP_830819.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere... gi\|206968198, gi... - gi\|206968198\|ref\|ZP_03229154.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus c... gi\|228605929, gi... - gi\|229177567\|ref\|ZP_04304945.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|228633986, gi... - gi\|229149344\|ref\|ZP_04277580.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu... gi\|229143742, gi... - gi\|229143742\|ref\|ZP_04272163.1\| Glycerol-3-phosphate responsive antiterminator, GlpP [Bacillus cereu...	246.0	[0..11]	[187..5]
gi\|42736117, gi\|... - gi\|42780199\|ref\|NP_977446.1\| glycerol uptake operon antiterminator regulatory protein [Bacillus cere...	246.0	[0..11]	[187..5]
gi\|22778163, gi\|... - gi\|23099932\|ref\|NP_693398.1\| transcriptional antiterminator of glycerol uptake operon [Oceanobacillu...	243.0	[0..14]	[187..7]
gi\|242258678, gi... - gi\|242258678\|ref\|ZP_04803422.1\| glycerol-3-phosphate responsive antiterminator, GlpP [Thermoanaeroba... gi\|167039668, gi... - gi\|167039668\|ref\|YP_001662653.1\| glycerol-3-phosphate responsive antiterminator [Thermoanaerobacter ...	240.0	[0..1]	[189..1]
gi\|76795728, gi\|... - gi\|76795728\|ref\|ZP_00778100.1\| Glycerol-3-phosphate responsive antiterminator [Thermoanaerobacter et... gi\|241903308, gi... - gi\|241903308\|ref\|ZP_04788034.1\| glycerol-3-phosphate responsive antiterminator, GlpP [Thermoanaeroba...	240.0	[0..1]	[189..1]
gi\|52002616, gi\|... - gi\|52784765\|ref\|YP_090594.1\| hypothetical protein BLi00993 [Bacillus licheniformis ATCC 14580], gi\|5...	238.0	[0..12]	[187..6]
gi\|7462400 - pir\|\|D72254 glycerol uptake operon antiterminator - Thermotoga maritima (strain MSB8) gi\|15644182, gi\|... - gi\|4981996\|gb\|AAD36501.1\|AE001795_4 glycerol uptake operon antiterminator [Thermotoga maritima MSB8]...	237.0	[0..4]	[188..10]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDKILETMT EFPIIAAVRE IKDVKEAVSS NTQVIFLLSG DIMNICDLVD FIKKNGKIAF  60
   61 VHFDLIEGLG KDTKAVEYIA ERIKPHGIIS TRNNILDHAK DFGLFSIQRL FMLDSQALKT 120
  121 GLSSAKQIRP DAVEILPGIM PSIIKEVAND VLMPVIAGGL VRTKEEVINA IKAGAIAVST 180
  181 SEKSLWFIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.69897
Match:	1vkfA
Description:	Crystal structure of Glycerol uptake operon antiterminator-related protein (TM1436) from Thermotoga maritima at 1.65 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	2.53572000448636	bayes_pls_golite062009
transcription antiterminator activity	1.03328675497923	bayes_pls_golite062009
binding	0.61117010765727	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: