YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|20807759
Organism:	Caldanaerobacter subterraneus subsp. tengcongensis
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20807759.

Description	E-value	Query Range	Subject Range
gi\|167040190, gi... - gi\|167040190\|ref\|YP_001663175.1\| NUDIX hydrolase [Thermoanaerobacter sp. X514], gi\|166854430\|gb\|ABY9... gi\|241902783, gi... - gi\|241902783\|ref\|ZP_04787514.1\| NUDIX hydrolase [Thermoanaerobacter brockii subsp. finnii Ako-1], gi... gi\|242258345, gi... - gi\|242258345\|ref\|ZP_04803159.1\| NUDIX hydrolase [Thermoanaerobacter sp. X513], gi\|242230130\|gb\|EES32... gi\|76796749, gi\|... - gi\|76796749\|ref\|ZP_00779103.1\| NUDIX hydrolase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	172.0	[0..1]	[177..1]
gi\|251810916, gi... - gi\|251810916\|ref\|ZP_04825389.1\| ADP-ribose diphosphatase [Staphylococcus epidermidis BCM-HMP0060], g... gi\|57866974, gi\|... - gi\|57866974\|ref\|YP_188639.1\| MutT/nudix family protein [Staphylococcus epidermidis RP62A], gi\|576376... gi\|27468101, gi\|... - gi\|27468101\|ref\|NP_764738.1\| ADP-ribose pyrophosphatase [Staphylococcus epidermidis ATCC 12228], gi\|...	166.0	[0..1]	[179..1]
gi\|88944793, gi\|... - gi\|88944793\|ref\|ZP_01148017.1\| NTP pyrophosphohydrolases including oxidative damage repair enzymes [...	164.0	[0..2]	[177..3]
gi\|82498927, gi\|... - gi\|82498927\|ref\|ZP_00884381.1\| ADP-ribose pyrophosphatase, putative [Caldicellulosiruptor saccharoly...	162.0	[0..1]	[179..1]
gi\|196251996, gi... - gi\|196251996\|ref\|ZP_03150660.1\| NUDIX hydrolase [Clostridium thermocellum DSM 4150], gi\|196198585\|gb... gi\|48858520, gi\|... - gi\|67916121\|ref\|ZP_00509842.1\| NUDIX hydrolase [Clostridium thermocellum ATCC 27405], gi\|67849923\|gb...	161.0	[0..1]	[174..1]
gi\|15643937, gi\|... - gi\|4981730\|gb\|AAD36256.1\|AE001774_13 conserved hypothetical protein [Thermotoga maritima MSB8], gi\|1... gi\|7445034 - pir\|\|H72286 conserved hypothetical protein - Thermotoga maritima (strain MSB8)	160.0	[0..1]	[173..1]
gi\|98662389 - gi\|98662389\|dbj\|GAA00716.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	154.0	[0..3]	[172..7]
gi\|106894349, gi... - gi\|158320627\|ref\|YP_001513134.1\| NUDIX hydrolase [Alkaliphilus oremlandii OhILAs], gi\|158140826\|gb\|A...	154.0	[0..1]	[175..1]
gi\|151221619, gi... - gi\|151221619\|ref\|YP_001332441.1\| ADP-ribose pyrophosphatase [Staphylococcus aureus subsp. aureus str... gi\|253728793, gi... - gi\|253733253\|ref\|ZP_04867418.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus TCH130... gi\|161509727, gi... - gi\|161509727\|ref\|YP_001575386.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus USA30... gi\|49486337, gi\|... - gi\|49486337\|ref\|YP_043558.1\| putative ADP-ribose pyrophosphatase [Staphylococcus aureus subsp. aureu... gi\|21283182, gi\|... - gi\|21283182\|ref\|NP_646270.1\| hypothetical protein MW1453 [Staphylococcus aureus subsp. aureus MW2], ... gi\|87161796\|ref\|... - MutT/nudix family protein [Staphylococcus aureus subsp. aureus USA300], MutT/nudix family protein [S... gi\|57650455, gi\|... - gi\|57650455\|ref\|YP_186384.1\| MutT/nudix family protein [Staphylococcus aureus subsp. aureus COL], gi... gi\|88195304, gi\|... - gi\|88195304\|ref\|YP_500108.1\| NUDIX domain-containing protein [Staphylococcus aureus subsp. aureus NC... gi\|221137809 - gi\|221137809\|ref\|ZP_03562611.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus str. J... gi\|251801942, gi... - gi\|251814494\|ref\|ZP_04828967.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus TCH70]... gi\|87127770, gi\|... - gi\|87161796\|ref\|YP_494145.1\| MutT/nudix family protein [Staphylococcus aureus subsp. aureus USA300_F... gi\|221140080 - gi\|221140080\|ref\|ZP_03564573.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus str. J... gi\|253732142, gi... - gi\|253732142\|ref\|ZP_04866307.1\| ADP-ribose diphosphatase [Staphylococcus aureus subsp. aureus USA300... gi\|82751092, gi\|... - gi\|82751092\|ref\|YP_416833.1\| ADP-ribose pyrophosphatase [Staphylococcus aureus RF122], gi\|82656623\|e...	154.0	[0..1]	[179..1]
gi\|33566206 - gi\|33566206\|emb\|CAE37112.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596437 - gi\|33596437\|ref\|NP_884080.1\| hypothetical protein BPP1810 [Bordetella parapertussis 12822] gi\|33576711, gi\|... - gi\|33602272\|ref\|NP_889832.1\| hypothetical protein BB3297 [Bordetella bronchiseptica RB50], gi\|335767...	153.0	[0..2]	[174..20]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQKEPTVST RKVFEGKIIN LRVDEVRLPN GKITTREIVE HPGGVSIVAV TNDGKILLVK  60
   61 QYRKPAEEVL LEIPAGKLEK GEDPLECAKR ELSEETGYEA GHIEHLITFY TTPGFSNEKM 120
  121 YLYFAKDLKK SKVHPDEDEF LEVGEYFPEE LWKMILENKI KDSKTIIGVL YYLKMRNEKI 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1mk1A
Description:	Structure of the MT-ADPRase in complex with ADPR, a Nudix enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	0.914814648797509	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.60834739024706	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.608343780811364	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: