YRC Public Data Repository - Protein Structure Prediction

Protein:	ENSCJAT00000019678
Organism:	Callithrix jacchus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENSCJAT00000019678.

Description	E-value	Query Range	Subject Range
gi\|81674554, gi\|... - gi\|81674554\|gb\|AAI09893.1\| Thioredoxin-like 4A [Bos taurus], gi\|115497060\|ref\|NP_001069528.1\| thiore...	1.0E-37	[1..142]	[1..142]
gi\|149721195 - gi\|149721195\|ref\|XP_001494862.1\| PREDICTED: similar to Thioredoxin-like protein 4A (Thioredoxin-like... gi\|149627057 - gi\|149627057\|ref\|XP_001507748.1\| PREDICTED: similar to Dim1p homolog [Ornithorhynchus anatinus] gi\|542145620\|ref... - PREDICTED: thioredoxin-like protein 4A [Zonotrichia albicollis] tr\|M3VV07\|M3VV07... - Thioredoxin like 4A OS=Felis catus GN=TXNL4A PE=4 SV=1 gi\|118086300, gi... - gi\|50733538\|ref\|XP_418903.1\| PREDICTED: similar to Dim1p homolog isoform 2 [Gallus gallus], gi\|11808... gi\|73945343 - gi\|73945343\|ref\|XP_533363.2\| PREDICTED: similar to dim1 isoform 1 [Canis familiaris] gi\|126321922 - gi\|126321922\|ref\|XP_001366433.1\| PREDICTED: similar to Dim1p homolog [Monodelphis domestica] gi\|61831228 - gi\|61831228\|ref\|XP_615554.1\| PREDICTED: similar to dim1 isoform 1 [Bos taurus] gi\|194033756 - gi\|194033756\|ref\|XP_001924886.1\| PREDICTED: similar to Thioredoxin-like protein 4A (Thioredoxin-like...	2.0E-37	[1..142]	[1..142]
gi\|56753429 - gi\|56753429\|gb\|AAW24918.1\| SJCHGC05540 protein [Schistosoma japonicum]	4.0E-37	[1..142]	[1..142]
Dim1-PA - The gene Dim1 is referred to in FlyBase by the symbol Dmel\Dim1 (CG3058, FBgn0031601). It is a prote... gi\|54645310, gi\|... - gi\|54645310\|gb\|EAL34050.1\| GA15896 [Drosophila pseudoobscura pseudoobscura], gi\|125986441\|ref\|XP_001... gi\|195471256, gi... - gi\|195471256\|ref\|XP_002087921.1\| GE18287 [Drosophila yakuba], gi\|194174022\|gb\|EDW87633.1\| GE18287 [D... gi\|194162906, gi... - gi\|195437787\|ref\|XP_002066821.1\| GK24348 [Drosophila willistoni], gi\|194162906\|gb\|EDW77807.1\| GK2434... gi\|220947888, gi... - gi\|220957200\|gb\|ACL91143.1\| Dim1-PA [synthetic construct], gi\|220947888\|gb\|ACL86487.1\| Dim1-PA [synt... gi\|125986441\|ref... - GA15896-PA [Drosophila pseudoobscura], GA15896 [Drosophila pseudoobscura pseudoobscura] gi\|194766239, gi... - gi\|194766239\|ref\|XP_001965232.1\| GF21189 [Drosophila ananassae], gi\|190617842\|gb\|EDV33366.1\| GF21189... gi\|195035719, gi... - gi\|195035719\|ref\|XP_001989319.1\| GH10125 [Drosophila grimshawi], gi\|193905319\|gb\|EDW04186.1\| GH10125... gi\|190660535, gi... - gi\|194856066\|ref\|XP_001968668.1\| GG25001 [Drosophila erecta], gi\|190660535\|gb\|EDV57727.1\| GG25001 [D... gi\|195159534, gi... - gi\|195159534\|ref\|XP_002020633.1\| GL15133 [Drosophila persimilis], gi\|194117583\|gb\|EDW39626.1\| GL1513... gi\|195118000, gi... - gi\|195118000\|ref\|XP_002003528.1\| GI22095 [Drosophila mojavensis], gi\|193914103\|gb\|EDW12970.1\| GI2209... gi\|194149220, gi... - gi\|195388184\|ref\|XP_002052763.1\| GJ19964 [Drosophila virilis], gi\|194149220\|gb\|EDW64918.1\| GJ19964 [... gi\|195342451, gi... - gi\|195342451\|ref\|XP_002037814.1\| GM18471 [Drosophila sechellia], gi\|194132664\|gb\|EDW54232.1\| GM18471...	4.0E-37	[1..142]	[1..142]
gi\|108877785, gi... - gi\|94469104\|gb\|ABF18401.1\| U4/U6.U5 snRNP/mitosis protein DIM1 component [Aedes aegypti], gi\|157113...	4.0E-37	[1..142]	[1..142]
gi\|66533106 - gi\|66533106\|ref\|XP_624360.1\| PREDICTED: similar to thioredoxin-like 4 isoform a [Apis mellifera]	4.0E-37	[1..142]	[1..142]
gi\|91080733 - gi\|91080733\|ref\|XP_975428.1\| PREDICTED: similar to mitosis protein dim1 [Tribolium castaneum]	4.0E-37	[1..142]	[1..142]
gi\|62860202, gi\|... - gi\|89269554\|emb\|CAJ82675.1\| thioredoxin-like 4A [Xenopus tropicalis], gi\|62860202\|ref\|NP_001016646.1...	7.0E-37	[1..142]	[1..142]
gi\|148225007, gi... - gi\|57920944\|gb\|AAH89128.1\| MGC85128 protein [Xenopus laevis], gi\|148225007\|ref\|NP_001089208.1\| hypot... gi\|225706116 - gi\|225706116\|gb\|ACO08904.1\| Thioredoxin-like protein 4A [Osmerus mordax]	1.0E-36	[1..142]	[1..142]
gi\|21300089, gi\|... - gi\|31222366\|ref\|XP_317168.1\| AGAP008298-PA [Anopheles gambiae str. PEST], gi\|21300089\|gb\|EAA12234.1\|... AGAP008298-PA - U5 snRNP protein, DIM1 family\|protein_coding\|3R:8640494:8641029:1\|gene:AGAP008298	1.0E-36	[1..142]	[1..142]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYMLPHLHN GWQVDQAILS EEDRVVVIRF GHDWDPTCMK MDEVLYSIAE KVKNFAVIYL  60
   61 VDITEVPDFN KMYELYDPCT VMFFFRNKHI MIDLGTGNNN KINWAMEDKQ EMVDIIETVY 120
  121 RGARKGRGLV VSPKDYSTKY RY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1qgvA
Description:	spliceosomal protein U5-15Kd
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	5.14545280785816	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
transcription regulator activity	1.20376609684075	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: