YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19704600, gi\|...
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19704600, gi|....

Description	E-value	Query Range	Subject Range
gi\|34763092, gi\|... - gi\|34763092\|ref\|ZP_00144063.1\| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC...	172.0	[0..1]	[202..1]
gi\|48861429, gi\|... - gi\|90022262\|ref\|YP_528089.1\| OmpA family protein [Saccharophagus degradans 2-40], gi\|89951862\|gb\|ABD...	169.0	[0..1]	[200..17]
gi\|56179681, gi\|... - gi\|56460671\|ref\|YP_155952.1\| Outer membrane protein and related peptidoglycan-associated (lipo)prote...	169.0	[0..2]	[200..11]
gi\|89092082, gi\|... - gi\|89092082\|ref\|ZP_01165037.1\| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92], gi\|8908...	167.0	[0..1]	[202..9]
gi\|15964027 - gi\|15964027\|ref\|NP_384380.1\| hypothetical protein SMc00354 [Sinorhizobium meliloti 1021] gi\|15073203 - gi\|15073203\|emb\|CAC41711.1\| Probable porin [Sinorhizobium meliloti 1021]	164.0	[0..1]	[202..10]
gi\|56129797, gi\|... - gi\|56415540\|ref\|YP_152615.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. enteric...	164.0	[0..3]	[202..15]
gi\|113527675, gi... - gi\|113868899\|ref\|YP_727388.1\| outer membrane protein peptidoglycan-associated(lipo)proteins [Ralston...	162.0	[0..2]	[202..13]
gi\|76793249, gi\|... - gi\|76793249\|ref\|ZP_00775739.1\| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pseudoalteromonas atlant...	161.0	[0..1]	[200..11]
gi\|78519943, gi\|... - gi\|78702553\|ref\|ZP_00866986.1\| conserved hypothetical transmembrane protein [Alkalilimnicola ehrlich...	160.0	[0..8]	[200..21]
gi\|110834272, gi... - gi\|110834272\|ref\|YP_693131.1\| OmpA family protein [Alcanivorax borkumensis SK2], gi\|110647383\|emb\|CA...	159.0	[0..2]	[200..12]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALSLVSCT GLEAGNGAYT AGGAAGGAAL GAVAGQVIGK DTKGTLIGAA VGSLLGMGWG  60
   61 AYRDNQEREL KAKLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTQAQVRKDG NALVINLPGG VTFASDSANI TSGFYSALNG IAQSLNNYPE TRIQVNGYTD  60
   61 NTGKDAHNQE LSQRRANAVA QYLIAQGVSS NRIVANGFGS SNPIASNSTP EGRLQNRRVE 120
  121 IKILPAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits