YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19704600, gi\|...
Organism:	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19704600, gi|....

Description	E-value	Query Range	Subject Range
gi\|34763092, gi\|... - gi\|34763092\|ref\|ZP_00144063.1\| Outer membrane protein [Fusobacterium nucleatum subsp. vincentii ATCC...	172.0	[0..1]	[202..1]
gi\|48861429, gi\|... - gi\|90022262\|ref\|YP_528089.1\| OmpA family protein [Saccharophagus degradans 2-40], gi\|89951862\|gb\|ABD...	169.0	[0..1]	[200..17]
gi\|56179681, gi\|... - gi\|56460671\|ref\|YP_155952.1\| Outer membrane protein and related peptidoglycan-associated (lipo)prote...	169.0	[0..2]	[200..11]
gi\|89092082, gi\|... - gi\|89092082\|ref\|ZP_01165037.1\| hypothetical protein MED92_07941 [Oceanospirillum sp. MED92], gi\|8908...	167.0	[0..1]	[202..9]
gi\|15964027 - gi\|15964027\|ref\|NP_384380.1\| hypothetical protein SMc00354 [Sinorhizobium meliloti 1021] gi\|15073203 - gi\|15073203\|emb\|CAC41711.1\| Probable porin [Sinorhizobium meliloti 1021]	164.0	[0..1]	[202..10]
gi\|56129797, gi\|... - gi\|56415540\|ref\|YP_152615.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. enteric...	164.0	[0..3]	[202..15]
gi\|113527675, gi... - gi\|113868899\|ref\|YP_727388.1\| outer membrane protein peptidoglycan-associated(lipo)proteins [Ralston...	162.0	[0..2]	[202..13]
gi\|76793249, gi\|... - gi\|76793249\|ref\|ZP_00775739.1\| OmpA/MotB:Rickettsia 17 kDa surface antigen [Pseudoalteromonas atlant...	161.0	[0..1]	[200..11]
gi\|78519943, gi\|... - gi\|78702553\|ref\|ZP_00866986.1\| conserved hypothetical transmembrane protein [Alkalilimnicola ehrlich...	160.0	[0..8]	[200..21]
gi\|110834272, gi... - gi\|110834272\|ref\|YP_693131.1\| OmpA family protein [Alcanivorax borkumensis SK2], gi\|110647383\|emb\|CA...	159.0	[0..2]	[200..12]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLALSLVSCT GLEAGNGAYT AGGAAGGAAL GAVAGQVIGK DTKGTLIGAA VGSLLGMGWG  60
   61 AYRDNQEREL KAKLQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.433	a.4.1	Homeodomain-like
View	Download	0.390	a.130.1	Chorismate mutase II
View	Download	0.425	a.51.1	Cytochrome c oxidase subunit h
View	Download	0.613	a.112.1	Description not found.
View	Download	0.439	a.112.1	Description not found.

Predicted Domain #2

Region A:
Residues: [76-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTQAQVRKDG NALVINLPGG VTFASDSANI TSGFYSALNG IAQSLNNYPE TRIQVNGYTD  60
   61 NTGKDAHNQE LSQRRANAVA QYLIAQGVSS NRIVANGFGS SNPIASNSTP EGRLQNRRVE 120
  121 IKILPAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	2hqsH
Description:	No description for 2hqsH was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits