YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RTOR1_ARATH
Organism: Arabidopsis thaliana
Length: 1344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for RTOR1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALGDLMVSR FSQSSVSLVS NHRYDEDCVS SHDDGDSRRK DSEAKSSSSY GNGTTEGAAT  60
   61 ATSMAYLPQT IVLCELRHDA SEASAPLGTS EIVLVPKWRL KERMKTGCVA LVLCLNITVD 120
  121 PPDVIKISPC ARIEAWIDPF SMAPPKALET IGKNLSTQYE RWQPRARYKV QLDPTVDEVR 180
  181 KLCLTCRKYA KTERVLFHYN GHGVPKPTAN GEIWVFNKSY TQYIPLPISE LDSWLK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [237-320]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPSIYVFDCS AARMILNAFA ELHDWGSSGS SGSSRDCILL AACDVHETLP QSVEFPADVF  60
   61 TSCLTTPIKM ALKWFCRRSL LKEI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [321-407]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDESLIDRIP GRQNDRKTLL GELNWIFTAV TDTIAWNVLP HELFQRLFRQ DLLVASLFRN  60
   61 FLLAERIMRS ANCNPISHPM LPPTHQH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [408-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HMWDAWDMAA EICLSQLPQL VLDPSTEFQP SPFFTEQLTA FEVWLDHGSE HKKPPEQLPI  60
   61 VLQVLLSQCH RFRALVLLGR FLDMGSWAVD LALSVGIFPY VLKLLQTTTN ELRQILVFIW 120
  121 TKILALDKSC QIDLVKDGGH TYFIRFLDSS GAFPEQRAMA AFVLAVIVDG HRRGQEACLE 180
  181 ANLIGVCLGH LEASRPSDPQ PEPLFLQWLC LCLGKLWEDF MEAQIMGREA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [638-704]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NAFEKLAPLL SEPQPEVRAA AVFALGTLLD IGFDSNKSVV EDEFDDDEKI RAEDAIIKSL  60
   61 LDVVSDG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [705-787]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLVRAEVAV ALARFAFGHK QHLKLAAASY WKPQSSSLLT SLPSIAKFHD PGSATIVSLH  60
   61 MSPLTRASTD SQPVARESRI SSS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [788-935]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLGSSGLMQG SPLSDDSSLH SDSGMMHDSV SNGAVHQPRL LDNAVYSQCV RAMFALAKDP  60
   61 SPRIASLGRR VLSIIGIEQV VAKPSKPTGR PGEAATTSHT PLAGLARSSS WFDMHAGNLP 120
  121 LSFRTPPVSP PRTNYLSGLR RVCSLEFR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.221849
Match: 1s4uX
Description: Crystal Structure analysis of the beta-propeller protein Ski8p
Matching Structure (courtesy of the PDB):

Predicted Domain #8
Region A:
Residues: [936-1344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHLLGSPDSG LADPLLGASG SERSLLPLST IYGWSCGHFS KPLLGGADAS QEIAAKREEK  60
   61 EKFALEHIAK CQHSSISKLN NNPIANWDTR FETGTKTALL HPFSPIVVAA DENERIRVWN 120
  121 YEEATLLNGF DNHDFPDKGI SKLCLINELD DSLLLVASCD GSVRIWKNYA TKGKQKLVTG 180
  181 FSSIQGHKPG ARDLNAVVDW QQQSGYLYAS GETSTVTLWD LEKEQLVRSV PSESECGVTA 240
  241 LSASQVHGGQ LAAGFADGSL RLYDVRSPEP LVCATRPHQK VERVVGLSFQ PGLDPAKVVS 300
  301 ASQAGDIQFL DLRTTRDTYL TIDAHRGSLT ALAVHRHAPI IASGSAKQLI KVFSLQGEQL 360
  361 GIIRYYPSFM AQKIGSVSCL TFHPYQVLLA AGAADSFVSI YTHDNSQAR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.154902
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle