YRC Public Data Repository - Protein Structure Prediction

Protein:	RSMG_LISMO
Organism:	Listeria monocytogenes EGD-e
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RSMG_LISMO.

Description	E-value	Query Range	Subject Range
gi\|47093263, gi\|... - gi\|47093263\|ref\|ZP_00231034.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 4b ...	196.0	[0..1]	[238..1]
RSMG_LISMF - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain F2365)...	194.0	[0..1]	[238..1]
RSMG_ENTFA - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis (strain ATCC 700802 / V583)... RSMG_ENTFA, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis GN=rsmG PE=3 SV=1, Methyltr...	194.0	[0..1]	[238..1]
gi\|89100945, gi\|... - gi\|89100945\|ref\|ZP_01173792.1\| glucose-inhibited division protein B [Bacillus sp. NRRL B-14911], gi\|...	193.0	[0..1]	[238..1]
RSMG_LISIN - Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua serovar 6a (strain CLIP 11262) G... GIDB_LISIN, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua GN=rsmG PE=3 SV=1, Methyltransfe...	192.0	[0..1]	[238..1]
gi\|56554498 - gi\|56554498\|pdb\|1XDZ\|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis Glucose Inhibit...	191.0	[0..1]	[238..2]
gi\|221316408 - gi\|221316408\|ref\|ZP_03598213.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti... gi\|221321321 - gi\|221321321\|ref\|ZP_03602615.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti... RSMG_BACSU, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis GN=rsmG PE=1 SV=1, Methyltransf... RSMG_BACSU - Ribosomal RNA small subunit methyltransferase G OS=Bacillus subtilis (strain 168) GN=rsmG PE=1 SV=1 gi\|221325604 - gi\|221325604\|ref\|ZP_03606898.1\| glucose-inhibited division protein B [Bacillus subtilis subsp. subti...	191.0	[0..1]	[238..1]
GIDB_LACLA, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. lactis GN=rsmG PE=3 SV=... RSMG_LACLA - Ribosomal RNA small subunit methyltransferase G OS=Lactococcus lactis subsp. lactis (strain IL1403) ...	190.0	[0..1]	[238..1]
RSMG_EXIS2 - Ribosomal RNA small subunit methyltransferase G OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM...	188.0	[0..1]	[237..1]
RSMG_BACC4 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain B4264) GN=rsmG PE=3 SV=1 RSMG_BACCR - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM... gi\|228817057, gi... - gi\|228942631\|ref\|ZP_04105163.1\| Methyltransferase GidB [Bacillus thuringiensis serovar berliner ATCC... gi\|228905426, gi... - gi\|228905426\|ref\|ZP_04069381.1\| Methyltransferase GidB [Bacillus thuringiensis IBL 4222], gi\|2288542... gi\|228961746, gi... - gi\|228961746\|ref\|ZP_04123349.1\| Methyltransferase GidB [Bacillus thuringiensis serovar pakistani str... gi\|228955732, gi... - gi\|228955732\|ref\|ZP_04117727.1\| Methyltransferase GidB [Bacillus thuringiensis serovar kurstaki str.... gi\|228784171, gi... - gi\|228975561\|ref\|ZP_04136113.1\| Methyltransferase GidB [Bacillus thuringiensis serovar thuringiensis... gi\|228968634, gi... - gi\|228968634\|ref\|ZP_04129617.1\| Methyltransferase GidB [Bacillus thuringiensis serovar sotto str. T0... gi\|229020707, gi... - gi\|229020707\|ref\|ZP_04177434.1\| Methyltransferase GidB [Bacillus cereus AH1273], gi\|228740602\|gb\|EEL... gi\|228982197, gi... - gi\|228982197\|ref\|ZP_04142486.1\| Methyltransferase GidB [Bacillus thuringiensis Bt407], gi\|228777549\|... gi\|228722214, gi... - gi\|229051151\|ref\|ZP_04194695.1\| Methyltransferase GidB [Bacillus cereus AH676], gi\|228722214\|gb\|EEL7... gi\|229026923, gi... - gi\|229026923\|ref\|ZP_04183246.1\| Methyltransferase GidB [Bacillus cereus AH1272], gi\|228734381\|gb\|EEL... gi\|74491027, gi\|... - gi\|75761488\|ref\|ZP_00741452.1\| Methyltransferase gidB [Bacillus thuringiensis serovar israelensis AT... gi\|228683524, gi... - gi\|229099909\|ref\|ZP_04230832.1\| Methyltransferase GidB [Bacillus cereus Rock3-29], gi\|228683524\|gb\|E... gi\|228710193, gi... - gi\|229072947\|ref\|ZP_04206143.1\| Methyltransferase GidB [Bacillus cereus F65185], gi\|228710193\|gb\|EEL... RSMG_BACC2 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain G9842) GN=rsmG PE=3 SV=1 gi\|229118972, gi... - gi\|229118972\|ref\|ZP_04248317.1\| Methyltransferase GidB [Bacillus cereus Rock1-3], gi\|228664497\|gb\|EE... gi\|228670574, gi... - gi\|229112895\|ref\|ZP_04242426.1\| Methyltransferase GidB [Bacillus cereus Rock1-15], gi\|228670574\|gb\|E... gi\|229148032, gi... - gi\|229148032\|ref\|ZP_04276371.1\| Methyltransferase GidB [Bacillus cereus BDRD-ST24], gi\|228635457\|gb\|... gi\|228652745, gi... - gi\|229130728\|ref\|ZP_04259681.1\| Methyltransferase GidB [Bacillus cereus BDRD-Cer4], gi\|228652745\|gb\|... gi\|228601761, gi... - gi\|229181728\|ref\|ZP_04309051.1\| Methyltransferase GidB [Bacillus cereus 172560W], gi\|228601761\|gb\|EE...	188.0	[0..1]	[238..1]

Back

Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPEQFQMAL AEKGIELSDD QMKQFHDYFE MLVEWNEKMN LTAITDEKEV YLKHFYDSIS  60
   61 AAFYVDFTKF DTICDVGAGA GFPSLPIKIC FPHLKVSIVD SLKKRMTFLD ALAEKLGLTD 120
  121 VHFYHDRAET FGQNKAHREK YDLVTARAVA RMSVLSELCM PLVKKGGSFL VMKAAQAEQE 180
  181 LQTAEKAIKL FGGKVEEHFS FSLPVEESER NIYVITKTKE TPNKYPRKPG TPNKLPIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.64500705012502	bayes_pls_golite062009
rRNA methyltransferase activity	4.60300178039953	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.57389022626587	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.74830027382001	bayes_pls_golite062009
RNA methyltransferase activity	3.6174490060285	bayes_pls_golite062009
N-methyltransferase activity	3.00112136063228	bayes_pls_golite062009
protein methyltransferase activity	2.74535979387581	bayes_pls_golite062009
transferase activity	2.42370637689376	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	2.03602074114015	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.93015827477588	bayes_pls_golite062009
DNA-methyltransferase activity	1.8182614465692	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
histone methyltransferase activity	1.42140847541194	bayes_pls_golite062009
arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.40233857644962	bayes_pls_golite062009
tRNA methyltransferase activity	1.32437128142157	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.26573118969035	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.88654745691593	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	0.67380437956274	bayes_pls_golite062009
O-methyltransferase activity	0.59365370184158	bayes_pls_golite062009
rRNA (guanine-N2-)-methyltransferase activity	0.427131446117391	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.355464145533041	bayes_pls_golite062009
rRNA (cytosine) methyltransferase activity	0.346042596102079	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: