YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25303454, gi\|...
Organism:	Listeria monocytogenes
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25303454, gi|....

Description	E-value	Query Range	Subject Range
gi\|25303453, gi\|... - pir\|\|AG1744 conserved hypothetical protein and to B. subtilis YutF protein homolog lin2500 [imported... gi\|16801562 - gi\|16801562\|ref\|NP_471830.1\| hypothetical protein lin2500 [Listeria innocua Clip11262]	190.0	[0..1]	[255..1]
gi\|46881847, gi\|... - gi\|46908575\|ref\|YP_014964.1\| HAD family hydrolase [Listeria monocytogenes str. 4b F2365], gi\|4688184... gi\|47018639, gi\|... - gi\|47092985\|ref\|ZP_00230765.1\| HAD-superfamily hydrolase, subfamily IIA [Listeria monocytogenes str.... gi\|254825475 - gi\|254825475\|ref\|ZP_05230476.1\| HAD family hydrolase [Listeria monocytogenes FSL J1-194] gi\|133726253, gi... - gi\|153168482\|ref\|ZP_01928325.1\| hypothetical protein LMHG_01347 [Listeria monocytogenes FSL N1-017],... gi\|254879436 - gi\|254879436\|ref\|ZP_05252146.1\| HAD family hydrolase [Listeria monocytogenes FSL J2-071] gi\|153203974, gi... - gi\|254933172\|ref\|ZP_05266531.1\| HAD family hydrolase [Listeria monocytogenes HPB2262], gi\|153203974\|... gi\|254853593 - gi\|254853593\|ref\|ZP_05242941.1\| HAD family hydrolase [Listeria monocytogenes FSL R2-503] gi\|255522419 - gi\|255522419\|ref\|ZP_05389656.1\| HAD family hydrolase [Listeria monocytogenes FSL J1-175]	188.0	[0..1]	[255..1]
gi\|52081724, gi\|... - gi\|52787110\|ref\|YP_092939.1\| YutF [Bacillus licheniformis ATCC 14580], gi\|52349612\|gb\|AAU42246.1\| Yu...	185.0	[0..1]	[255..1]
gi\|126941052, gi... - gi\|254900464\|ref\|ZP_05260388.1\| HAD-superfamily subfamily IIA hydrolase [Listeria monocytogenes J016... gi\|254937679, gi... - gi\|254937679\|ref\|ZP_05269376.1\| HAD-superfamily subfamily IIA hydrolase [Listeria monocytogenes F690... gi\|254913298, gi... - gi\|254913298\|ref\|ZP_05263310.1\| HAD-superfamily subfamily IIA hydrolase [Listeria monocytogenes J281... gi\|47015755, gi\|... - gi\|47095878\|ref\|ZP_00233482.1\| HAD-superfamily hydrolase, subfamily IIA [Listeria monocytogenes str....	183.0	[0..1]	[255..1]
YUTF_BACSU - Uncharacterized hydrolase yutF OS=Bacillus subtilis GN=yutF PE=1 SV=1 YUTF_BACSU - Acid sugar phosphatase OS=Bacillus subtilis (strain 168) GN=yutF PE=1 SV=1 gi\|221315498 - gi\|221315498\|ref\|ZP_03597303.1\| hypothetical protein BsubsN3_17437 [Bacillus subtilis subsp. subtili... gi\|221320413 - gi\|221320413\|ref\|ZP_03601707.1\| hypothetical protein BsubsJ_17400 [Bacillus subtilis subsp. subtilis... gi\|221324697 - gi\|221324697\|ref\|ZP_03605991.1\| hypothetical protein BsubsS_17551 [Bacillus subtilis subsp. subtilis...	183.0	[0..1]	[252..1]
gi\|89084747, gi\|... - gi\|89100560\|ref\|ZP_01173420.1\| YutF [Bacillus sp. NRRL B-14911], gi\|89084747\|gb\|EAR63888.1\| YutF [Ba...	182.0	[0..1]	[254..4]
gi\|77175661, gi\|... - gi\|77405739\|ref\|ZP_00782825.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Streptococcus aga... gi\|76799342, gi\|... - gi\|76799342\|ref\|ZP_00781503.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Streptococcus aga... gi\|23095342, gi\|... - gi\|25010963\|ref\|NP_735358.1\| hypothetical protein gbs0909 [Streptococcus agalactiae NEM316], gi\|2309... gi\|22533913, gi\|... - gi\|22537055\|ref\|NP_687906.1\| HAD superfamily hydrolase [Streptococcus agalactiae 2603V/R], gi\|225339... gi\|76788561, gi\|... - gi\|76788561\|ref\|YP_329637.1\| HAD family hydrolase [Streptococcus agalactiae A909], gi\|76563618\|gb\|AB... gi\|77413177, gi\|... - gi\|77413177\|ref\|ZP_00789376.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Streptococcus aga... gi\|77411006, gi\|... - gi\|77411006\|ref\|ZP_00787361.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Streptococcus aga... gi\|77173442, gi\|... - gi\|77407984\|ref\|ZP_00784734.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Streptococcus aga...	181.0	[0..2]	[255..1]
gi\|51974042, gi\|... - gi\|52140573\|ref\|YP_086257.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) [Bac...	181.0	[0..4]	[252..2]
gi\|217962424, gi... - gi\|217962424\|ref\|YP_002340996.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH187], g... gi\|218906151, gi... - gi\|218906151\|ref\|YP_002453985.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH820], g... gi\|196040536, gi... - gi\|196040536\|ref\|ZP_03107836.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus NVH0597-99... gi\|206970312, gi... - gi\|206970312\|ref\|ZP_03231265.1\| phosphatase,haloacid dehalogenase family [Bacillus cereus AH1134], g... gi\|228829663, gi... - gi\|228929983\|ref\|ZP_04092994.1\| hypothetical protein bthur0010_46650 [Bacillus thuringiensis serovar... gi\|228835822, gi... - gi\|228923693\|ref\|ZP_04086971.1\| hypothetical protein bthur0011_46680 [Bacillus thuringiensis serovar... gi\|228842065, gi... - gi\|228917585\|ref\|ZP_04081129.1\| hypothetical protein bthur0012_47910 [Bacillus thuringiensis serovar... gi\|228856151, gi... - gi\|228903466\|ref\|ZP_04067591.1\| hypothetical protein bthur0014_46270 [Bacillus thuringiensis IBL 422... gi\|228710427, gi... - gi\|229072451\|ref\|ZP_04205653.1\| hypothetical protein bcere0025_46120 [Bacillus cereus F65185], gi\|22... gi\|229049653, gi... - gi\|229049653\|ref\|ZP_04194210.1\| hypothetical protein bcere0027_46110 [Bacillus cereus AH676], gi\|228... gi\|221242468, gi... - gi\|222098409\|ref\|YP_002532467.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) ... gi\|228771498, gi... - gi\|228988201\|ref\|ZP_04148298.1\| hypothetical protein bthur0001_48590 [Bacillus thuringiensis serovar... gi\|228823372, gi... - gi\|228936256\|ref\|ZP_04099055.1\| hypothetical protein bthur0009_46940 [Bacillus thuringiensis serovar... gi\|229141677, gi... - gi\|229141677\|ref\|ZP_04270207.1\| hypothetical protein bcere0013_47670 [Bacillus cereus BDRD-ST26], gi... gi\|229130219, gi... - gi\|229130219\|ref\|ZP_04259178.1\| hypothetical protein bcere0015_46550 [Bacillus cereus BDRD-Cer4], gi... gi\|228658835, gi... - gi\|229124495\|ref\|ZP_04253680.1\| hypothetical protein bcere0016_47790 [Bacillus cereus 95/8201], gi\|2... gi\|229112405, gi... - gi\|229112405\|ref\|ZP_04241943.1\| hypothetical protein bcere0018_46450 [Bacillus cereus Rock1-15], gi\|... gi\|228602153, gi... - gi\|229181260\|ref\|ZP_04308590.1\| hypothetical protein bcere0005_46020 [Bacillus cereus 172560W], gi\|2... gi\|229158555, gi... - gi\|229158555\|ref\|ZP_04286614.1\| hypothetical protein bcere0010_47280 [Bacillus cereus ATCC 4342], gi... gi\|228630251, gi... - gi\|229153152\|ref\|ZP_04281331.1\| hypothetical protein bcere0011_46820 [Bacillus cereus m1550], gi\|228... gi\|229147508, gi... - gi\|229147508\|ref\|ZP_04275855.1\| hypothetical protein bcere0012_46370 [Bacillus cereus BDRD-ST24], gi... gi\|229199107, gi... - gi\|229199107\|ref\|ZP_04325790.1\| hypothetical protein bcere0001_46200 [Bacillus cereus m1293], gi\|228... gi\|228590218, gi... - gi\|229193241\|ref\|ZP_04320192.1\| hypothetical protein bcere0002_48880 [Bacillus cereus ATCC 10876], g... gi\|49480351, gi\|... - gi\|49480351\|ref\|YP_038978.1\| 4-nitrophenylphosphatase (p-nitrophenylphosphate phosphohydrolase) [Bac... gi\|42784142, gi\|... - gi\|42784142\|ref\|NP_981389.1\| phosphatase [Bacillus cereus ATCC 10987], gi\|42740073\|gb\|AAS43997.1\| ph... gi\|30022999, gi\|... - gi\|30022999\|ref\|NP_834630.1\| 4-nitrophenylphosphatase [Bacillus cereus ATCC 14579], gi\|29898559\|gb\|A...	180.0	[0..4]	[252..2]
gi\|47566995, gi\|... - gi\|47566995\|ref\|ZP_00237712.1\| HAD-superfamily subfamily IIA hydrolase, TIGR01457 [Bacillus cereus G...	180.0	[0..4]	[252..2]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNYKAYLID LDGTMYRGAE VIPEAIIFIE NLKRAGLPYL FVTNNSTKTP GQVAEHLTDM  60
   61 GIQAVSDDVF TTSQATVQFM MEQKREKTVY VIGERGIKQE LTDNGFEITS SNPAFVVVGL 120
  121 DREVDYEKFS KAALAVRGGA MFISTNGDAA IPTERGLLPG NGSITSVVSV ATETAPIFIG 180
  181 KPESIIMEQA LAKLGVHKDE AIMVGDNYET DIMAGINYGM DTLIVHTGFT SKEALLTKEI 240
  241 QPTYAVTKLT DWEFN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.522879
Match:	1yv9A
Description:	Crystal Structure of a Hypothetical protein from hydrolase haloacid dehalogenase-like family
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphatase activity	5.67874236681937	bayes_pls_golite062009
phosphoric ester hydrolase activity	5.47006620187028	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	4.48428199248982	bayes_pls_golite062009
hydrolase activity	4.39056655921797	bayes_pls_golite062009
phosphoprotein phosphatase activity	3.46809320224801	bayes_pls_golite062009
catalytic activity	1.55296860681783	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	1.21677981254341	bayes_pls_golite062009
protein serine/threonine phosphatase activity	0.704515064625628	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.525704827211584	bayes_pls_golite062009
binding	0.504752091326444	bayes_pls_golite062009
kinase activity	0.497538501078274	bayes_pls_golite062009
nucleic acid binding	0.437068552068699	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.381009626718837	bayes_pls_golite062009
cation transmembrane transporter activity	0.201233537100321	bayes_pls_golite062009
DNA binding	0.0915524013623013	bayes_pls_golite062009
protein tyrosine phosphatase activity	0.0550960879804855	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: